################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:10:16 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/vprotease.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1vcpa.pdb
#   2: 1wyka.pdb
#
# Length:        152
# Identity:       98/152 ( 64.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     98/152 ( 64.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            3/152 (  2.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1vcpa.pdb               1  -CIFEVKHE-GKVTGYACLVGDKVMKPAHVKGVIDNADLAKLAFKKSSKYDLECAQIPVH   58
1wyka.pdb               1  MRLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVN   60
                              F VK E G V G A     KVMKP HVKG ID   L KL F KSS YD E AQ PV 

1vcpa.pdb              59  MRSDASKYTHEKPEGHYNWHHGAVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVAIVLG  118
1wyka.pdb              61  MRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLG  120
                           MRS A  YT E PEG YNWHHGAVQYSGGRFTIP G G  GDSGRPI DN GRVVAIVLG

1vcpa.pdb             119  GANEGSRTALSVVTWNKDMVTRVTPEGSEEW-  149
1wyka.pdb             121  GADEGTRTALSVVTWNSKGKTIKTTPEGTEEW  152
                           GA EG RTALSVVTWN    T  T     E  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################