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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:08:46 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/voltage_CLC.html
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#====================================
# Aligned_structures: 2
#   1: 1kpka.pdb
#   2: 1kpla.pdb
#
# Length:        454
# Identity:      333/454 ( 73.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    333/454 ( 73.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           28/454 (  6.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kpka.pdb               1  QAARLRRRQLIRQLLERDKTPLAILFMAAVVGTL----VGLAAVAFDKGVAWLQNQRMGA   56
1kpla.pdb               1  -----------------------TPLAILFMAAVVGTLTGLVGVAFEKAVSWVQNMRIGA   37
                                                                  GL  VAF K V W QN R GA

1kpka.pdb              57  LVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWWRV  116
1kpla.pdb              38  LVQVADHAFLLWPLAFILSALLAMVGYFLVRKFAPEAGGSGIPEIEGALEELRPVRWWRV   97
                           LV  AD   LL   AF  SA LAM GYFLVRK APEAGGSGIPEIEGALE  RPVRWWRV

1kpka.pdb             117  LPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLA  176
1kpla.pdb              98  LPVKFIGGMGTLGAGMVLGREGPTVQIGGNLGRMVLDVFRMRSAEARHTLLATGAAAGLS  157
                           LPVKF GG GTLG GMVLGREGPTVQIGGN GRMVLD FR    EARHTLLATGAAAGL 

1kpka.pdb             177  AAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDA  236
1kpla.pdb             158  AAFNAPLAGILFIIEEMRPQFRYNLISIKAVFTGVIMSSIVFRIFNGEAPIIEVGKLSDA  217
                           AAFNAPLAGILFIIEEMRPQFRY LISIKAVF GVIMS I  RIFN E   I VGKLSDA

1kpka.pdb             237  PLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGF  296
1kpla.pdb             218  PVNTLWLYLILGIIFGVVGPVFNSLVLRTQDMFQRFHGGEIKKWVLMGGAIGGLCGILGL  277
                           P NTLWLYLILGIIFG  GP FN  VL  QD   R HGG I KWVLMGGAIGGLCG LG 

1kpka.pdb             297  VAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVL  356
1kpla.pdb             278  IEPAAAGGGFNLIPIAAAGNFSVGLLLFIFITRVVTTLLCFSSGAPGGIFAPMLALGTLL  337
                             PA  GGGFNLIPIA AGNFS G L FIF  RV TTLLCFSSGAPGGIFAPMLALGT L

1kpka.pdb             357  GTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII  416
1kpla.pdb             338  GTAFGMAAAVLFPQYHLEAGTFAIAGMGALMAASVRAPLTGIVLVLEMTDNYQLILPMII  397
                           GTAFGM A  LFPQYHLEAGTFAIAGMGAL AAS RAPLTGI LVLEMTDNYQLILPMII

1kpka.pdb             417  TGLGATLLAQFTGGKPLYSAILARTLAKQEAEQL  450
1kpla.pdb             398  TCLGATLLAQFLGGKPLYSTILARTLAKQDAEQ-  430
                           T LGATLLAQF GGKPLYS ILARTLAKQ AEQ 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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