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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:43:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/transcript_fac2.html
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#====================================
# Aligned_structures: 2
#   1: 1aisb.pdb
#   2: 1vola.pdb
#
# Length:        206
# Identity:       62/206 ( 30.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     62/206 ( 30.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           16/206 (  7.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aisb.pdb               1  NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK   60
1vola.pdb               1  AMMNAFKEITTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEG   60
                               A  E         LPR        L R A       GR       AC Y ACR   

1aisb.pdb              61  VPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRR  120
1vola.pdb              61  VPRTFKEICAVSRISKKEIGRCFKLILKALETSVD--LITTGDFMSRFCSNLCLPKQVQM  118
                           VPRT  EI    R  KKEIGR    I   L            D    F   L L   V  

1aisb.pdb             121  RAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK  180
1vola.pdb             119  AATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYR  178
                            A  I   A    L  G SP    AAA Y AS    EKRTQ E    A V  VT R  Y 

1aisb.pdb             181  ELVEKL------KIKVPIA-------  193
1vola.pdb             179  LIYPRAPDLFPTDFKFDT-PVDKLPQ  203
                                         K           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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