################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 12:19:21 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tms.html
################################################################################################
#====================================
# Aligned_structures: 5
#   1: 1bkpa.pdb
#   2: 1tis.pdb
#   3: 2tsra.pdb
#   4: 3tms.pdb
#   5: 4tms.pdb
#
# Length:        377
# Identity:       58/377 ( 15.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    106/377 ( 28.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          130/377 ( 34.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bkpa.pdb               1  TQFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDN-SEVPILTT   59
1tis.pdb                1  ---MKQYQDLIKDIFENGYET--------DDRT--GTGTIALFGSKLRWDLTKGFPAVTT   47
2tsra.pdb               1  QHGELQYLRQVEHIMRCGFKK--------EDRT--GTGTLSVFGMQARYSLRDEFPLLTT   50
3tms.pdb                1  ---MKQYLELMQKVLDEGTQK--------NDRT--GTGTLSIFGHQMRFNLQDGFPLVTT   47
4tms.pdb                1  -MLEQPYLDLAKKVLDEGHFK--------PDRT--HTGTYSIFGHQMRFDLSKGFPLLTT   49
                                qY          G            Drt   tgT s fg q R  l   fP  TT

1bkpa.pdb              60  KKVAWKTAIKELLWIWQLKSNDVNDLNMMG--------VHIWDQ-WK----------QE-   99
1tis.pdb               48  KKLAWKACIAELIWFL-SGSTNVNDLRLIQHDSLIQGK-TVWDEN-YENQAKDLG--YH-  101
2tsra.pdb              51  KRVFWKGVLEELLWFI-KGSTNAKELSSKG--------VRIWDA-NG---------SRDF   91
3tms.pdb               48  KRCHLRSIIHELLWFL-QGDTNIAYLHENN--------VTIWDE-WA----------DE-   86
4tms.pdb               50  KKVPFGLIKSELLWFL-HGDTNIRFLLQHR--------NHIWDE-WA--------F-E--   88
                           K         ELlWf   g tn   L              iWD                 

1bkpa.pdb             100  ------------------------------------------------------DGTIGH  105
1tis.pdb              102  ------------------------------------------------------SGELGP  107
2tsra.pdb              92  LDSLG--------------------------------------------FSARQEGDLGP  107
3tms.pdb               87  ------------------------------------------------------NGDLGP   92
4tms.pdb               89  KWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKFDDRVLHDDAFAA----KYGDLGL  144
                                                                                  G lG 

1bkpa.pdb             106  AYGFQLGK----------KNRSLNG-EKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDA  154
1tis.pdb              108  IYGKQWRDFG----------------GV-DQIIEVIDRIKKLPNDRRQIVSAWNPAELKY  150
2tsra.pdb             108  VYGFQWRHFGADYKDMDSDYS--GQ-GV-DQLQKVIDTIKTNPDDRRIIMCAWNPKDLPL  163
3tms.pdb               93  VYGKQWRAWP-----------TPDGRHI-DQITTVLNQLKNDPDSRRIIVSAWNVGELDK  140
4tms.pdb              145  VYGSQWRAWH-----------TSKGDTI-DQLGDVIEQIKTHPYSRRLIVSAWNPEDVPT  192
                            YG Qwr                      DQ   v    K  P  RR I  aWNp  l  

1bkpa.pdb             155  MALTPCVYETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYI  214
1tis.pdb              151  MALPPCHMFYQFNVRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLI  210
2tsra.pdb             164  MALPPCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFV  223
3tms.pdb              141  MALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFV  200
4tms.pdb              193  MALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFI  252
                           MAL PCh   QfyV  G L  q yqRS D  LG PFNiasYa L    A    l  G   

1bkpa.pdb             215  FNIGDCHVYTRHIDNLKIQMEREQFEAPELWINPE-----VK-------DFYDFTIDDFK  262
1tis.pdb              211  FSGGNTHIYMNHVEQCKEILRREPKELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFV  270
2tsra.pdb             224  HTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRK-----VE-------TIDDFKVEDFQ  271
3tms.pdb              201  WTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRK-----PE-------SIFDYRFEDFE  248
4tms.pdb              253  HTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPD-----KH-------DIFDFDMKDIK  300
                              Gd H Y nH    k ql Rep   p L i                    d    Df 

1bkpa.pdb             263  LINYKHGDKLLF-EVAV  278
1tis.pdb              271  LNNYVSHPPIKGKMAV-  286
2tsra.pdb             272  IEGYNPHPTI-------  281
3tms.pdb              249  IEGYDPHPGIKA-PVAI  264
4tms.pdb              301  LLNYDPYPAIKA-PVAV  316
                              Y   p i       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################