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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:30:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tln.html
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#====================================
# Aligned_structures: 4
#   1: 1bqba.pdb
#   2: 1ezm.pdb
#   3: 1npc.pdb
#   4: 8tlne.pdb
#
# Length:        347
# Identity:       54/347 ( 15.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    145/347 ( 41.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           79/347 ( 22.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bqba.pdb               1  ---AAATGTGKGV---LGDTKD-----ININSIDGGFSLEDLTHQGKLSAYNFNDQ--TG   47
1ezm.pdb                1  -----AEAGGPGGNQKIGKYTYGSDYGPLIVND--RCE--MDDG--NVITVDMNS-STDD   48
1npc.pdb                1  VTGTNKVGTGKGV---LGDTKS-----LNTTLSGSSYYLQDNTRGATIFTYDAKN-RSTL   51
8tlne.pdb               1  ITGTSTVGVGRGV---LGDQKN-----INTTYS-TYYYLQDNTRGDGIFTYDAKY-RTTL   50
                                  g G Gv   lGd k       n           d t      tyd      t 

1bqba.pdb              48  QA-TLITNEDENFVKD-----DQRAGVDANYYAKQTYDYYKNTFGRESYDNH-GSPIVSL  100
1ezm.pdb               49  SKTTPFRFACPTNTYKQVNGAY-SPLNDAHFFGGVVFKLYRDWFGTSP----LTHKLYMK  103
1npc.pdb               52  PG-TLWADADNVFNAA-----YDAAAVDAHYYAGKTYDYYKATFNRNSINDA-GAPLKST  104
8tlne.pdb              51  PG-SLWADADNQFFAS-----YDAPAVDAHYYAGVTYDYYKNVHNRLSYDGN-NAAIRSS  103
                              tl   ad  f        y    vDAhyyag tydyYk  f r s          s 

1bqba.pdb             101  THVNHYGGQDN--RNNAAWIGDKMIYGDGDGRTFTNLSGANDVVAHEITHGVTQQTANLE  158
1ezm.pdb              104  VHYG-------RSVENAYWDGTAMLFGDGATM-FYP-LVSLDVAAHEVSHGFTEQNSGLI  154
1npc.pdb              105  VHYG-------SNYNNAFWNGSQMVYGDGDGVTFTSLSGGIDVIGHELTHAVTENSSNLI  157
8tlne.pdb             104  VHYS-------QGYNNAFWNGSEMVYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLI  156
                           vHy           nNA W G  M yGDGdg  F   sg  DV aHE tH vT     Li

1bqba.pdb             159  YKDQSGALNESFSDVFGYFVDD-----EDFLMGEDVYTPGKEGDALRSMSNPEQFG-QPS  212
1ezm.pdb              155  YRGQSGGMNEAFSDMAGEAAEFYMRGKNDFLIGYDIKK--G-SGALRYMDQPSRDGRSID  211
1npc.pdb              158  YQNESGALNEAISDIFGTLVEFYDNRNPDWEIGEDIYTPGKAGDALRSMSDPTKYG-DPD  216
8tlne.pdb             157  YQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYG-DPD  215
                           Y   SGa NEa SD fG  vef      D  iGeD yt    gdaLRsMs P   G  pd

1bqba.pdb             213  HMKDYVYTEKDNGGVHTNSGIPNKAAYNVIQ-----------AIGKSKSEQIYYRALTEY  261
1ezm.pdb              212  NASQYYNG----IDVHHSSGVYNRAFYLLANS---------PGWDTRKAFEVFVDANRYY  258
1npc.pdb              217  HYSKRYTGSSDNGGVHTNSGIINKQAYLLANGGTHYGVTVT-GIGKDKLGAIYYRANTQY  275
8tlne.pdb             216  HYSKRYTGTQDNGGVHINSGIINKAAYLISQGGTHYGVSVV-GIGRDKLGKIFYRALTQY  274
                           h s  y g    ggVH nSGi NkaaYl              gig  K   i yrA t Y

1bqba.pdb             262  LTSNSNFKDLKDALYQAAKDLYEQ-Q--TAEQVYEAWNEVGVE----  301
1ezm.pdb              259  WTATSNYNSGACGVIRSAQNRN-----YSAADVTRAFSTVGVT--CP  298
1npc.pdb              276  FTQSTTFSQARAGAVQAAADLYGANSA-EVAAVKQSFSAVGVN----  317
8tlne.pdb             275  LTPTSNFSQLRAAAVQSATDLYGSTSQ-EVASVKQAFDAVGVKVK--  318
                            T  snf        q A dly        a V  af  VGV     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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