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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 12:18:49 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tgfb.html
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#====================================
# Aligned_structures: 5
#   1: 1bmp.pdb
#   2: 1klda.pdb
#   3: 1tgj.pdb
#   4: 2bmpa.pdb
#   5: 2tgi.pdb
#
# Length:        122
# Identity:       24/122 ( 19.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     35/122 ( 28.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           26/122 ( 21.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bmp.pdb                1  --------------QACKKHELYVSFRDLG-WQDWIIAPEGYAAYYCEGECAFPL--NSY   43
1klda.pdb               1  ALDTNYCFSSTE--KNCCVRQLYIDFRKDLGW-KWIHEPKGYHANFCLGPCPYIWSL---   54
1tgj.pdb                1  ALDTNYCFRNLE--ENCCVRPLYIDFRQDL-GWKWVHEPKGYYANFCSGPCPYLR-----   52
2bmpa.pdb               1  ------------LKSSCKRHPLYVDFSDVG-WNDWIVAPPGYHAFYCHGECPFPL--ADH   45
2tgi.pdb                1  ALDAAYCFRNVQ--DNCCLRPLYIDFKRDL-GWKWIHEPKGYNANFCAGACPYLW-----   52
                                           C    LY dF        Wi  P GY A  C G Cp        

1bmp.pdb               44  MNATNHAIVQTLVHFINPETVP-KPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACG  102
1klda.pdb              55  --DTQYSKVLALYNQHNPG-ASAAPCCVPQALEPLPIVYYV-GRKPKVEQLSNMIVRSCK  110
1tgj.pdb               53  SADTTHSTVLGLYNTLNPEASA-SPCCVPQDLEPLTILYYV-GRTPKVEQLSNMVVKSCK  110
2bmpa.pdb              46  LNSTNHAIVQTLVNSVNSK-IP-KACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCG  103
2tgi.pdb               53  SSDTQHSRVLSLYNTINPEASA-SPCCVSQDLEPLTILYYI-GKTPKIEQLSNMIVKSCK  110
                              T h  V  L n  Np      pCCvp  L     lY             nM V  C 

1bmp.pdb              103  CH  104
1klda.pdb             111  CS  112
1tgj.pdb              111  CS  112
2bmpa.pdb             104  CR  105
2tgi.pdb              111  CS  112
                           C 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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