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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:55:03 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tRNA-synt_1d_M.html
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#====================================
# Aligned_structures: 2
#   1: 1f7ua.pdb
#   2: 1iq0a.pdb
#
# Length:        398
# Identity:       73/398 ( 18.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     73/398 ( 18.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           80/398 ( 20.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f7ua.pdb               1  --SCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWG   58
1iq0a.pdb               1  APFPRR-PGVV-LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTG   58
                                         E  S N  K  H GHLR    G   A      G EV   NY  D G

1f7ua.pdb              59  KQFGLLAVGFERYGNEEA----LVKDPIHHLFDVYVRINKDIEEE-GDSIPLEQSTNGKA  113
1iq0a.pdb              59  RQAAETLFALRHYG----LTWDGKEKYDHFAGRAYVRLHQD---PEYE------RLQPAI  105
                            Q          YG              H     YVR   D                   

1f7ua.pdb             114  REYFKRMEDGDEEALKI-WKRFREFSIEKYIDTYARLNIKYDVYSGESQVSK---ESMLK  169
1iq0a.pdb             106  EEVLHALERG-------ELREEVNRILLAQMATMHALNARYDLLVWESDI--VRAGLLQK  156
                            E     E G                      T   LN  YD    ES           K

1f7ua.pdb             170  AIDLFKEKGLTHE------DKGAVLIDLTKFNKKL--GKAIVQKSDGTTLYLTRDVGAAM  221
1iq0a.pdb             157  ALALLEQSPHVFRPREGKYA-GALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQF  215
                           A  L                 GA   D       L         S GT  Y   D     

1f7ua.pdb             222  DRYE----------------------------KYHFDKMIYVIASQQDLHAAQFFEILKQ  253
1iq0a.pdb             216  WKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALAL  275
                                                                  I V    Q    A     L  

1f7ua.pdb             254  MGF-EWAKDLQHVNFGMVQ-G-MSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEH  310
1iq0a.pdb             276  AGYPALAEKAHHLAYETVLLEGRQMSG--AVSVDEVLEEATRRARAIVEEK---NPDHPD  330
                            G    A    H     V            V  D  LEE                     

1f7ua.pdb             311  PEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEG  348
1iq0a.pdb             331  KEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEG  368
                            EE A  V   A               F     LSFEG


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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