################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:56:30 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tRNA-synt_1_edit.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1ile.pdb
#   2: 1qu2a.pdb
#
# Length:        204
# Identity:       55/204 ( 27.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     55/204 ( 27.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           25/204 ( 12.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ile.pdb                1  KEIQDPSVYVRFPLKE--PKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGD   58
1qu2a.pdb               1  HDKRSASIYVAFNVKDDKGVVDA--DAKFIIWTTTPWTIPSNVAITVHPELKYGQYNV-N   57
                                 S YV F  K           A   IWTTTPWT P NVA  VHPE  Y    V  

1ile.pdb               59  --EALILEEGLGRKLLGE-------GTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLA  109
1qu2a.pdb              58  GEKY-IIAEALSDAVAE-ALDWDKASIKLEKEYTGKELEWVVAQHPFLDRE--SLVINGD  113
                                I  E L                   K   GK LE      P              

1ile.pdb              110  DYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLL--VEPFKGLYFREAN-  166
1qu2a.pdb             114  HVT-TDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANK  172
                                  GTG VH AP  G  D      Y LP     D  G        F G     AN 

1ile.pdb              167  RAILRDLRGRGLL-FKEESYLHSY  189
1qu2a.pdb             173  AVTDLLTEKGA--LLKLDFITHSY  194
                                          K     HSY


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################