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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 22:00:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/subt.html
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#====================================
# Aligned_structures: 8
# 1: 1a1ye.pdb
# 2: 1bh6a.pdb
# 3: 1dbia.pdb
# 4: 1gci.pdb
# 5: 1meea.pdb
# 6: 1sup.pdb
# 7: 1thm.pdb
# 8: 2prk.pdb
#
# Length: 325
# Identity: 46/325 ( 14.2%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 81/325 ( 24.9%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 95/325 ( 29.2%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1a1ye.pdb 1 A----QTV-------PYGIPLIK-----------ADKVQAQGF-KGANVKVAVLDTGIQA 37
1bh6a.pdb 1 A----QTV-------PYGIPLIK-----------ADKVQAQGY-KGANVKVGIIDTGIAS 37
1dbia.pdb 1 ----WTPNDTYYQGYQYGPQNTY-----------TDYAWDV-TKGSSGQEIAVIDTGVDY 44
1gci.pdb 1 A----QSV-------PWGISRVQ-----------APAAHNRGL-TGSGVKVAVLDTGIST 37
1meea.pdb 1 A----QSV-------PYGISQIK-----------APALHSQGY-TGSNVKVAVIDSGIDS 37
1sup.pdb 1 A----QSV-------PYGVSQIK-----------APALHSQGY-TGSNVKVAVIDSGIDS 37
1thm.pdb 1 ----YTPNDPYFSSRQYGPQKIQ-----------APQAWDI-A-EGSGAKIAIVDTGVQS 43
2prk.pdb 1 -AAQ-TNA-------PWGLARISSTSPGTSTYYY------DES-AGQGSCVYVIDTGIEA 44
G g D G
1a1ye.pdb 38 SHPDL--NVVGGASFVAGEA--Y-NTDGNGHGTHVAGTVAAL-DNTTGVLGVAPSVSLYA 91
1bh6a.pdb 38 SHTDL--KVVGGASFVSGES--Y-NTDGNGHGTHVAGTVAAL-DNTTGVLGVAPNVSLYA 91
1dbia.pdb 45 THPDLDGKVIKGYDFV--DNDYD-PMDLNNHGTHVAGIAAAETNNATGIAGMAPNTRILA 101
1gci.pdb 38 -HPDL--NIRGGASFVPGEP--S-TQDGNGHGTHVAGTIAAL-NNSIGVLGVAPSAELYA 90
1meea.pdb 38 SHPDL--NVRGGASFVPSET--NPYQDGSSHGTHVAGTIAAL-NNSIGVLGVAPSASLYA 92
1sup.pdb 38 SHPDL--KVAGGASMVPSET--NPFQDNNSHGTHVAGTVAAL-NNSIGVLGVAPSASLYA 92
1thm.pdb 44 NHPDLAGKVVGGWDFV--DNDST-PQNGNGHGTHCAGIAAAVTNNSTGIAGTAPKASILA 100
2prk.pdb 45 SHPEFEGRAQMVKTY---YY--S-SRDGNGHGTHCAGTVGS-R-----TYGVAKKTQLFG 92
Hpdl g d n HGTH AG aa G Ap a
1a1ye.pdb 92 VKVLNSSGSGSYSGIVSGIEWATTNG--------MDVINMSLGGASGSTAMKQAVDNAYA 143
1bh6a.pdb 92 IKVLNSSGSGSYSAIVSGIEWATQNG--------LDVINMSLGGPSGSTALKQAVDKAYA 143
1dbia.pdb 102 VRALDRNGSGTLSDIADAIIYAADSG--------AEVINLSLGCDCHTTTLENAVNYAWN 153
1gci.pdb 91 VKVLGASGSGSVSSIAQGLEWAGNNG--------MHVANLSLGSPSPSATLEQAVNSATS 142
1meea.pdb 93 VKVLDSTGSGQYSWIINGIEWAISNN--------MDVINMSLGGPTGSTALKTVVDKAVS 144
1sup.pdb 93 VKVLGADGSGQYSWIINGIEWAIANN--------MDVINMSLGGPSGSAALKAAVDKAVA 144
1thm.pdb 101 VRVLDNSGSGTWTAVANGITYAADQG--------AKVISLSLGGTVGNSGLQQAVNYAWN 152
2prk.pdb 93 VKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKG-VVASLSLGG-GYSSSVNSAAARLQS 150
v vL GSG s i g a V SLG av a
1a1ye.pdb 144 RGVVVVAAAGNSGSSGNTNT-IGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGA 202
1bh6a.pdb 144 SGIVVVAAAGNSGNSGSQNT-IGYPAKYDSVIAVGAVDSNKNRASFSSVGSELEVMAPGV 202
1dbia.pdb 154 KGSVVVAAAGNN--------------SYENVIAVGAVDQYDRLASFSNYGTWVDVVAPGV 199
1gci.pdb 143 RGVLVVAASGNSGA----GS-ISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV 197
1meea.pdb 145 SGIVVAAAAGNEGSSGSTST-VGYPAKYPSTIAVGAVNSANQRASFSSAGSELDVMAPGV 203
1sup.pdb 145 SGVVVVAAAGNEGTSGSSST-VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGV 203
1thm.pdb 153 KGSVVVAAAGNAGN----TA-PNYPAYYSNAIAVASTDQNDNKSSFSTYGSWVDVAAPGS 207
2prk.pdb 151 SGVMVAVAAGNNNA----DARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGT 206
G V aAaGN y aVga d SFS G aPG
1a1ye.pdb 203 GVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------ 256
1bh6a.pdb 203 SVYSTYPSNTYTSLNGTSMASPHVAGAAALILSKYPTLSASQVRNRLSSTATNL------ 256
1dbia.pdb 200 DIVSTITGNRYAYMSGTSMASPHVAGLAALLASQG--RNNIEIRQAIEQTADKI------ 251
1gci.pdb 198 NVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL------ 251
1meea.pdb 204 SIQSTLPGGTYGAYNGTSMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYL------ 257
1sup.pdb 204 SIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL------ 257
1thm.pdb 208 SIYSTYPTSTYASLSGTSMATPHVAGVAGLLASQG--RSASNIRAAIENTADKI------ 259
2prk.pdb 207 SILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLG-KTTAASACRYIADTANKGDLSNIP 265
ST y GTSMA PHVAG Aal r Ta
1a1ye.pdb 257 -GS-SFYYG-KGLINVE---AAAQ- 274
1bh6a.pdb 257 -GD-SFYYG-KGLINVE---AAAQ- 274
1dbia.pdb 252 -SGTGTYFK-YGRINSY---NAVTY 271
1gci.pdb 252 -GS-TNLYG-SGLVNAE---AATR- 269
1meea.pdb 258 -GS-SFYYG-KGLINVQ---AAAQ- 275
1sup.pdb 258 -GD-SFYYG-KGLINVQ---AAAQ- 275
1thm.pdb 260 -SGTGTYWA-KGRVNAY---KAVQY 279
2prk.pdb 266 F-G-----TVNLLAYNNYQA----- 279
g n
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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