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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 23:27:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/sh3.html
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#====================================
# Aligned_structures: 20
# 1: 1aoja.pdb
# 2: 1ark.pdb
# 3: 1awj.pdb
# 4: 1bb9.pdb
# 5: 1bbza.pdb
# 6: 1ckaa.pdb
# 7: 1cska.pdb
# 8: 1gbra.pdb
# 9: 1gria1.pdb
# 10: 1gria2.pdb
# 11: 1lcka.pdb
# 12: 1pht.pdb
# 13: 1qcfa.pdb
# 14: 1qlya.pdb
# 15: 1sema.pdb
# 16: 1shfa.pdb
# 17: 1shg.pdb
# 18: 1ycsb.pdb
# 19: 2hsp.pdb
# 20: 2src.pdb
#
# Length: 139
# Identity: 2/139 ( 1.4%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 3/139 ( 2.2%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 96/139 ( 69.1%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1aoja.pdb 1 ----------------------------KKYAKSKYDFVARNSSELSVMKDDVLEILDDR 32
1ark.pdb 1 --------------------T--A----GKIFRAMYDYMAADADEVSFKDGDAIINVQ-- 32
1awj.pdb 1 ----KKPLPPTPEDN---RRS--FQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDS- 50
1bb9.pdb 1 TTG---------RLDLPP--G--F----MFKVQAQHDYTATDTDELQLKAGDVVLVIPF- 42
1bbza.pdb 1 -----------------------------NLFVALYDFVASGDNTLSITKGEKLRVLGY- 30
1ckaa.pdb 1 ----------------------------AEYVRALFDFNGNDEEDLPFKKGDILRIRDK- 31
1cska.pdb 1 ----------------------------GTECIAKYNFHGTAEQDLPFCKGDVLTIVAV- 31
1gbra.pdb 1 ---------GSRRAS-----V--G----SMEAIAKYDFKATADDELSFKRGDILKVLNE- 39
1gria1.pdb 1 -----------------------------MEAIAKYDFKATADDELSFKRGDILKV---- 27
1gria2.pdb 1 -----------------------Q----PTYVQALFDFDPQEDGELGFRRGDFIHVMDN- 32
1lcka.pdb 1 ----------------------------DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ- 31
1pht.pdb 1 --------------------A--E----GYQYRALYDYKKEREEDIDLHLGDILTVNK-- 32
1qcfa.pdb 1 ---S----------------G--I----RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE- 34
1qlya.pdb 1 ----------------------------LKKVVALYDYMPMNANDLQLRKGDEYFILEE- 31
1sema.pdb 1 -----------------------E----TKFVQALFDFNPQESGELAFKRGDVITLINK- 32
1shfa.pdb 1 ----------------------------VTLFVALYDYEARTEDDLSFHKGEKFQILNS- 31
1shg.pdb 1 ----------------------------KELVLALYDYQEKSPREVTMKKGDILTLLNS- 31
1ycsb.pdb 1 ---------------------IMN----KGVIYALWDYEPQNDDELPMKEGDCMTIIHR- 34
2hsp.pdb 1 GSP------------T-------F----KCAVKALFDYKAQREDELTFIKSAIIQNVEK- 36
2src.pdb 1 -----------------------------TTFVALYDYESRTETDLSFKKGERLQIVNN- 30
a
1aoja.pdb 33 R---------------Q--------WWKVRN-A-SG--------DSGF-VPNNILDIMRT 58
1ark.pdb 33 --------A------I---D---EGWMYGTVQR-TG--------RTGM-LPANYVEAI-- 60
1awj.pdb 51 ---------------S---E---IHWWRVQD-K-NG--------HEGY-APSSYLVEKS- 77
1bb9.pdb 43 QNPE----E------Q---D---EGWLMGVKES-DWNQHKELEKCRGV-FPENFTERVQ- 83
1bbza.pdb 31 ---------------N---H--NGEWCEAQT---KN--------GQGW-VPSNYITPVNS 58
1ckaa.pdb 32 ---------------P---E---EQWWNAED-S-E---------GKRGMIPVPYVEK--- 56
1cska.pdb 32 ---------------TK--D---PNWYKAKN-K-V---------GREGIIPANYVQK--- 57
1gbra.pdb 40 ---------------EC--D---QNWYKAEL-N-G---------KDGF-IPKNYIEMKP- 66
1gria1.pdb 28 -----------------------QNWYKAEL-N-G---------KDGF-IPKNYIEMK-- 50
1gria2.pdb 33 ---------------S---D---PNWWKGAC-H--G--------QTGM-FPRNYVTPVN- 58
1lcka.pdb 32 ---------------S-------GEWWKAQSLT-TG--------QEGF-IPFNFV----- 54
1pht.pdb 33 G-S-LVALGFSDGQEA---RPEEIGWLNGYNET-TG--------ERGD-FPGTYVEYIG- 76
1qcfa.pdb 35 ---------------S-------GEWWKARSLA-TR--------KEGY-IPSNYVARVDS 62
1qlya.pdb 32 ---------------S---N---LPWWRARD-K-NG--------QEGY-IPSNYVTE--- 56
1sema.pdb 33 ---------------D---D---PNWWEGQL-N--N--------RRGI-FPSNYVCPYN- 58
1shfa.pdb 32 ---------------S---E---GDWWEARSLT-TG--------ETGY-IPSNYVAPVD- 59
1shg.pdb 32 ---------------T---N---KDWWKVEV-N--D--------RQGF-VPAAYVKKLD- 57
1ycsb.pdb 35 ---------------EDEDE---IEWWWARL-N--D--------KEGY-VPRNLLGLY-- 62
2hsp.pdb 37 ---------------Q---E---GGWWRGDY-GGK---------KQLW-FPSNYVEEMV- 63
2src.pdb 31 ---------------T---E---GDWWLAHSLS-TG--------QTGY-IPSNYVAPSDS 59
W P
1aoja.pdb 59 ------PE----------- 60
1ark.pdb -------------------
1awj.pdb -------------------
1bb9.pdb -------------------
1bbza.pdb -------------------
1ckaa.pdb -------------------
1cska.pdb -------------------
1gbra.pdb 67 --HPE-F-I-VTD------ 74
1gria1.pdb -------------------
1gria2.pdb 59 --R--NV------------ 61
1lcka.pdb -------------------
1pht.pdb 77 RKKIS-P-P---------- 83
1qcfa.pdb 63 -------------LET--- 65
1qlya.pdb 57 ----------------AE- 58
1sema.pdb -------------------
1shfa.pdb -------------------
1shg.pdb -------------------
1ycsb.pdb 63 ------------------P 63
2hsp.pdb 64 NPEGI-H-RD--------- 71
2src.pdb 60 -------------IQA--- 62
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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