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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 23:33:44 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/sh2.html
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#====================================
# Aligned_structures: 11
#   1: 1ab2.pdb
#   2: 1aouf.pdb
#   3: 1ayd.pdb
#   4: 1bfj.pdb
#   5: 1csza.pdb
#   6: 1lkka.pdb
#   7: 1shba.pdb
#   8: 1zfpe.pdb
#   9: 2plda.pdb
#  10: 2pnb.pdb
#  11: 3hck.pdb
#
# Length:        175
# Identity:        6/175 (  3.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     14/175 (  8.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           93/175 ( 53.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ab2.pdb                1  GSG-------NSL---E-----K---------HSWYHGPVSRNAAEY-LLSS---GINGS   32
1aouf.pdb               1  -----------------------SI-----QAEEWYFGKLGRKDAERQLLS-FG-NPRGT   30
1ayd.pdb                1  -------------------------------MRRWFHPNITGVEAENLLLT-R--GVDGS   26
1bfj.pdb                1  -----------------EDLP-------HHDEKTWNVGSSNRNKAENLLRG----KRDGT   32
1csza.pdb               1  ---GSRRASVGSH---E-----K---------MPWFHGKISREESEQIVLI-G-SKTNGK   38
1lkka.pdb               1  ------------L--E------P---------EPWFFKNLSRKDAERQLLA-PG-NTHGS   29
1shba.pdb               1  -------------------------------AEEWYFGKITRRESERLLLN-PE-NPRGT   27
1zfpe.pdb               1  ---------------K------P---------HPWFFGKIPRAKAEEMLSK-Q--RHDGA   27
2plda.pdb               1  ---------------------GS--PGIHE-SKEWYHASLTRAQAEHMLMR-V--PRDGA   33
2pnb.pdb                1  --------------LQ------D---------AEWYWGDISREEVNEKLRD----TADGT   27
3hck.pdb                1  -------------M-E------T---------EEWFFKGISRKDAERQLLA-PG-NMLGS   29
                                                             W      r   e  l         G 

1ab2.pdb               33  FLVRESESS-PGQRSISLRYE-----GRVYHYRINTASDGKLY--VSSE--SRFNTLAEL   82
1aouf.pdb              31  FLIRESETT-KGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYY--ITTR--AQFETLQQL   85
1ayd.pdb               27  FLARPSKSN-PGDFTLSVRRN-----GAVTHIKIQNTGDYYD---LYGG--EKFATLAEL   75
1bfj.pdb               33  FLVRESS-K-QGCYACSVVVD-----GEVKHCVINKTATGYG-FAE-PY--NLYSSLKEL   81
1csza.pdb              39  FLIRARDN--NGSYALCLLHE-----GKVLHYRIDKDKTGKLS--IPEG--KKFDTLWQL   87
1lkka.pdb              30  FLIRESEST-AGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFY--ISPR--ITFPGLHEL   84
1shba.pdb              28  FLVRESETT-KGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFY--ITSR--TQFSSLQQL   82
1zfpe.pdb              28  FLIRESESA-PGDFSLSVKFG-----NDVQHFKVLRDGAGKYF--LW-V--VKFNSLNEL   76
2plda.pdb              34  FLVRKRN-E-PNSYAISFRAE-----GKIKHCRVQQEGQTVM---L-GN--SEFDSLVDL   80
2pnb.pdb               28  FLVRDASTKMHGDYTLTLRKG-----GNNKLIKIFHRDGKYG---F-SDPL-TFNSVVEL   77
3hck.pdb               30  FMIRDSETT-KGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFY--ISPR--STFSTLQEL   84
                           Fl R       g                  h                      f  l  L

1ab2.pdb               83  VHHHSTVA--D--------G-LITTLHY----PAPK--RGIHRD-----------  109
1aouf.pdb              86  VQHYSERA--A--------G-LSSRLVVPSHK-----------------------  106
1ayd.pdb               76  VQYYMEHH--GQLKEKN--G-DVIELKY----PLN--------------------  101
1bfj.pdb               82  VLHYQHTS--L--VQHN-DS-LNVTLAY----PVY---------AQQRR------  111
1csza.pdb              88  VEHYSYKA--D--------G-LLRVLTV----PCQKIGTQ---------------  112
1lkka.pdb              85  VRHYTNAS--D--------G-LCTRLSR----PCQT-------------------  105
1shba.pdb              83  VAYYSKHA--D--------G-LCHRLTN----VCPT-------------------  103
1zfpe.pdb              77  VDYHRSTSVSR--------N-QQIFLRD----IEQ--------------------   98
2plda.pdb              81  ISYYEKHP--L--Y-------RKMKLRY----PI---------------NEENSS  105
2pnb.pdb               78  INHYRNES--L--AQYNP-KLD-VKLLY----PVSKY------------------  104
3hck.pdb               85  VDHYKKGN--D--------G-LCQKLSV----PCMSSK-----------------  107
                                                    L                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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