################################################################################################
# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 12:39:14 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/sermam.html
################################################################################################
#====================================
# Aligned_structures: 27
# 1: 1a0ja.pdb
# 2: 1a0la.pdb
# 3: 1a5ha.pdb
# 4: 1a5ia.pdb
# 5: 1a7s.pdb
# 6: 1ab9.pdb
# 7: 1azza.pdb
# 8: 1bbr.pdb
# 9: 1dfpa.pdb
# 10: 1fuja.pdb
# 11: 1fxya.pdb
# 12: 1hcga.pdb
# 13: 1hnee.pdb
# 14: 1kigh.pdb
# 15: 1klt.pdb
# 16: 1lmwb.pdb
# 17: 1mcta.pdb
# 18: 1npma.pdb
# 19: 1ppb.pdb
# 20: 1sgt.pdb
# 21: 1ton.pdb
# 22: 1trma.pdb
# 23: 2pka.pdb
# 24: 2ptn.pdb
# 25: 2tbs.pdb
# 26: 3est.pdb
# 27: 3rp2a.pdb
#
# Length: 352
# Identity: 15/352 ( 4.3%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 23/352 ( 6.5%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 173/352 ( 49.1%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1a0ja.pdb 1 I--------------VGGYECRKNSASYQASLQS----------G-YHFCGGSLISSTWV 35
1a0la.pdb 1 I--------------VGGQEAPRSKWPWQVSLRVH---G---PYW-MHFCGGSLIHPQWV 39
1a5ha.pdb 1 I--------------KGGLFADIASHPWQAAIFAK---HRRSPGE-RFLCGGILISSCWI 42
1a5ia.pdb 1 -TCGLRKYKEPQLHSTGGLFTDITSHPWQAAIFAQ---NRRSSGE-RFLCGGILISSCWV 55
1a7s.pdb 1 I--------------VGGRKARPRQFPFLASIQN----Q-----G-RHFCGGALIHARFV 36
1ab9.pdb 1 I--------------VNGEEAVPGSWPWQVSLQDK--------TG-FHFCGGSLINENWV 37
1azza.pdb 1 I--------------VGGVEAVPNSWPHQAALFI----D-----D-MYFCGGSLISPEWI 36
1bbr.pdb 1 I--------------VEGQDAEVGLSPWQVMLFRK---S----PQ-ELLCGASLISDRWV 38
1dfpa.pdb 1 I--------------LGGREAEAHARPYMASVQL----N-----G-AHLCGGVLVAEQWV 36
1fuja.pdb 1 I--------------VGGHEAQPHSRPYMASLQMRG--N-----PGSHFCGGTLIHPSFV 39
1fxya.pdb 1 I--------------VGGYNCKDGEVPWQALLINE---E-----N-EGFCGGTILSEFYI 37
1hcga.pdb 1 I--------------VGGQECKDGECPWQALLINE---E-----N-EGFCGGTILSEFYI 37
1hnee.pdb 1 I--------------VGGRRARPHAWPFMVSLQL----R-----G-GHFCGATLIAPNFV 36
1kigh.pdb 1 I--------------VGGRDCAEGECPWQALLVNE---E-----N-EGFCGGTILNEFYV 37
1klt.pdb 1 I--------------IGGTESKPHSRPYMAYLEIVTSNG-----P-SKFCGGFLIRRNFV 40
1lmwb.pdb 1 I--------------IGGEFTTIENQPWFAAIYRR---H-RGGSV-TYVCGGSLMSPCWV 41
1mcta.pdb 1 I--------------VGGYTCAANSIPYQVSLNS----------G-SHFCGGSLINSQWV 35
1npma.pdb 1 I--------------LEGRECIPHSQPWQAALFQ----G-----E-RLICGGVLVGDRWV 36
1ppb.pdb 1 I--------------VEGSDAEIGMSPWQVMLFRK---S----PQ-ELLCGASLISDRWV 38
1sgt.pdb 1 V--------------VGGTRAAQGEFPFMVRLSM--------------GCGGALYAQDIV 32
1ton.pdb 1 I--------------VGGYKCEKNSQPWQVAVIN----------E-Y-LCGGVLIDPSWV 34
1trma.pdb 1 I--------------VGGYTCQENSVPYQVSLNS----------G-YHFCGGSLINDQWV 35
2pka.pdb 1 I--------------IGGRECEKNSHPWQVAIYH----Y-----S-SFQCGGVLVNPKWV 36
2ptn.pdb 1 I--------------VGGYTCGANTVPYQVSLNS----------G-YHFCGGSLINSQWV 35
2tbs.pdb 1 I--------------VGGYECKAYSQAHQVSLNS----------G-YHFCGGSLVNENWV 35
3est.pdb 1 V--------------VGGTEAQRNSWPSQISLQYR---S--GSSW-AHTCGGTLIRQNWV 40
3rp2a.pdb 1 I--------------IGGVESIPHSRPYMAHLDIVTEKG-----L-RVICGGFLISRQFV 40
G CG
1a0ja.pdb 36 VSAAHCY------K--------S---RIQVRLGEHNIAVNE-G-TEQFIDSVKVIMHPSY 76
1a0la.pdb 40 LTAAHCVGPD---V--------KDLAALRVQLREQHLYYQ-----DQLLPVSRIIVHPQF 83
1a5ha.pdb 43 LSAAHCFQ-E---R----FPPH----HLTVILGRTYRVVPG-E-EEQKFEVEKYIVHKEF 88
1a5ia.pdb 56 LTAAHCFQ-E---S----YLPD----QLKVVLGRTYRVKPG-E-EEQTFKVKKYIVHKEF 101
1a7s.pdb 37 MTAASCF------P--------G---VSTVVLGAYDLRRRE-RQSRQTFSISSMSEN-GY 77
1ab9.pdb 38 VTAAHCG-V---------------TTSDVVVAGEFDQGSSS-E-KIQKLKIAKVFKNSKY 79
1azza.pdb 37 LTAAHCMD-G---A--------G---FVDVVLGAHNIREDE-A-TQVTIQSTDFTVHENY 79
1bbr.pdb 39 LTAAHCLL-Y--PPWDKNFTVD----DLLVRIGKHSRTRYERK-VEKISMLDKIYIHPRY 90
1dfpa.pdb 37 LSAAHCLE-D---A--------A-DGKVQVLLGAHSLSQPE-P-SKRLYDVLRAVPHPDS 81
1fuja.pdb 40 LTAAHCLR-D---I--------P-QRLVNVVLGAHNVRTQE-P-TQQHFSVAQVFLN-NY 83
1fxya.pdb 38 LTAAHCLY-Q---A--------K---RFKVRVGDRNTEQEE-G-GEAVHEVEVVIKHNRF 80
1hcga.pdb 38 LTAAHCLY-Q---A--------K---RFKVRVGDRNTEQEE-G-GEAVHEVEVVIKHNRF 80
1hnee.pdb 37 MSAAHCVA-N---V--------N-VRAVRVVLGAHNLSRRE-P-TRQVFAVQRIFED-GY 80
1kigh.pdb 38 LTAAHCLH-Q---A--------K---RFTVRVGDRNTEQEE-G-NEMAHEVEMTVKHSRF 80
1klt.pdb 41 LTAAHCA------G--------R---SITVTLGAHNITEEE-D-TWQKLEVIKQFRHPKY 81
1lmwb.pdb 42 ISATHCFI-D---Y----PKKE----DYIVYLGRSRLNSNT-Q-GEMKFEVENLILHKDY 87
1mcta.pdb 36 VSAAHCY------K--------S---RIQVRLGEHNIDVLE-G-NEQFINAAKIITHPNF 76
1npma.pdb 37 LTAAHCK------K--------Q---KYSVRLGDHSLQS---Q-PEQEIQVAQSIQHPCY 75
1ppb.pdb 39 LTAAHCLL-Y--PPWDKNFTEN----DLLVRIGKHSRTRYERN-IEKISMLEKIYIHPRY 90
1sgt.pdb 33 LTAAHCVSGSGN-N--------T---SITATGGVVDL--QS-G-AAVKVRSTKVLQAPGY 76
1ton.pdb 35 ITAAHCY------S--------N---NYQVLLGRNNLFKDE-P-FAQRRLVRQSFRHPDY 75
1trma.pdb 36 VSAAHCY------K--------S---RIQVRLGEHNINVLE-G-NEQFVNAAKIIKHPNF 76
2pka.pdb 37 LTAAHCK------N--------D---NYEVWLGRHNLFENE-N-TAQFFGVTADFPHPGF 77
2ptn.pdb 36 VSAAHCY------K--------S---GIQVRLGEDNINVVE-G-NEQFISASKSIVHPSY 76
2tbs.pdb 36 VSAAHCY------K--------S---RVEVRLGEHNIKVTE-G-SEQFISSSRVIRHPNY 76
3est.pdb 41 MTAAHCVD-R---E--------L---TFRVVVGEHNLNQNN-G-TEQYVGVQKIVVHPYW 83
3rp2a.pdb 41 LTAAHCK------G--------R---EITVILGAHDVRKRE-S-TQQKIKVEKQIIHESY 81
AahC v g
1a0ja.pdb 77 N------S-R--N--LDNDIMLIKLSK-----PASLNSYVSTVALPS--SC-----ASSG 113
1a0la.pdb 84 Y------T-----AQIGADIALLELEE-----PVKVSSHVHTVTLPPASET-----FPPG 122
1a5ha.pdb 89 D------D-D--T--YDNDIALLQLKSDS-SRCAQESSVVRTVCLPPADLQ-----LPDW 131
1a5ia.pdb 102 D------D-D--T--YNNDIALLQLKSDS-PQCAQESDSVRAICLPEANLQ-----LPDW 144
1a7s.pdb 78 D------P-Q--Q--NLNDLMLLQLDR-----EANLTSSVTILPLPLQNAT-----VEAG 116
1ab9.pdb 80 N------S-L--T--INNDITLLKLST-----AASFSQTVSAVCLPSASDD-----FAAG 118
1azza.pdb 80 N------S-F--V--ISNDIAVIRLPV-----PVTLTAAIATVGLPS--TD-----VGVG 116
1bbr.pdb 91 N------WKE--N--LDRDIALLKLKR-----PIELSDYIHPVCLPDK-Q-TAAKLLHAG 133
1dfpa.pdb 82 Q------P-D--T--IDHDLLLLQLSE-----KATLGPAVRPLPWQRVDRD-----VAPG 120
1fuja.pdb 84 D------A-E--N--KLNDILLIQLSS-----PANLSASVATVQLPQQDQP-----VPHG 122
1fxya.pdb 81 T------K-E--T--YDFDIAVLRLKT-----PITFRMNVAPASLPTAPPA-------TG 117
1hcga.pdb 81 T------K-E--T--YDFDIAVLRLKT-----PITFRMNVAPACLPERDW-AESTLM-TQ 122
1hnee.pdb 81 D------P-V--N--LLNDIVILQLNG-----SATINANVQVAQLPAQGRR-----LGNG 119
1kigh.pdb 81 V------K-E--T--YDFDIAVLRLKT-----PIRFRRNVAPACLPEKDW-AEATLM-TQ 122
1klt.pdb 82 N------T-S--T--LHHDIMLLKLKE-----KASLTLAVGTLPFPSQFNF-----VPPG 120
1lmwb.pdb 88 S------A-DTLA--HHNDIALLKIRS-KEGRCAQPSRTIQTICLPSMYND-----PQFG 132
1mcta.pdb 77 N------G-N--T--LDNDIMLIKLSS-----PATLNSRVATVSLPR--SC-----AAAG 113
1npma.pdb 76 NN---SNP-E--D--HSHDIMLIRLQN-----SANLGDKVKPVQLAN--LC-----PKVG 115
1ppb.pdb 91 N------WRE--N--LDRDIALMKLKK-----PVAFSDYIHPVCLPDR-E-TAASLLQAG 133
1sgt.pdb 77 N------G-------TGKDWALIKLAQ-----PINQ----PTLKIAT--TT-----AYNQ 107
1ton.pdb 76 IPLP---V-H--D--HSNDLMLLHLSE-----PADITGGVKVIDLPT--KE-----PKVG 115
1trma.pdb 77 D------R-K--T--LNNDIMLIKLSS-----PVKLNARVATVALPS--SC-----APAG 113
2pka.pdb 78 NL--SADG-K--D--YSHDLMLLRLQS-----PAKITDAVKVLELPT--QE-----PELG 118
2ptn.pdb 77 N------S-N--T--LNNDIMLIKLKS-----AASLNSRVASISLPT--SC-----ASAG 113
2tbs.pdb 77 S------S-Y--N--IDNDIMLIKLSK-----PATLNTYVQPVALPT--SC-----APAG 113
3est.pdb 84 N------T-D--DVAAGYDIALLRLAQ-----SVTLNSYVQLGVLPRAGTI-----LANN 124
3rp2a.pdb 82 N------S-V--P--NLHDIMLLKLEK-----KVELTPAVNVVPLPSPSDF-----IHPG 120
D l
1a0ja.pdb 114 TRCLVSGWGNLSGS---------S--SNYP--DTLRCLDLPILSSSSCN-S--A-YP--- 153
1a0la.pdb 123 MPCWVTGWGDVDND---------E---RLPPPFPLKQVKVPIMENHICD-A--K-YHLGA 166
1a5ha.pdb 132 TECELSGYGKHEAL---------S--PFYS--ERLKEAHVRLYPSSRCT--SQHLLN--- 173
1a5ia.pdb 145 TECELSGYGKHKSS---------S--PFYS--EQLKEGHVRLYPSSRCA--PKFLFN--- 186
1a7s.pdb 117 TRCQVAGWGSQRSG---------G---RLS--RFPRFVNVTVTPEDQC------------ 150
1ab9.pdb 119 TTCVTTGWGLTRY--------------NTP--DRLQQASLPLLSNTNCK-K--Y-WG--- 155
1azza.pdb 117 TVVTPTGWGLPSDS---------A--LGIS--DVLRQVDVPIMSNADCD-A--V-YG--- 156
1bbr.pdb 134 FKGRVTGWGNRRETWTTSVA------EVQP--SVLQVVNLPLVERPVCK-A--S-TR--- 178
1dfpa.pdb 121 TLCDVAGWGIVNHA---------G---RRP--DSLQHVLLPVLDRATCN-RRTH-HD--- 161
1fuja.pdb 123 TQCLAMGWGRVGAH---------D---PPA--QVLQELNVTVV-TFFC------------ 155
1fxya.pdb 118 TKCLISGWGNTASS---------G--ADYP--DELQCLDAPVLSQAKCE-A--S-YP--- 157
1hcga.pdb 123 KTGIVSGFGRTH-----------------S--TRLKMLEVPYVDRNSCK-L--S-SS--- 156
1hnee.pdb 120 VQCLAMGWGLLGRN---------R---GIA--SVLQELNVTVV-TSLC------------ 152
1kigh.pdb 123 KTGIVSGFGRTHE----------K--GRLS--STLKMLEVPYVDRSTCK-L--S-SS--- 161
1klt.pdb 121 RMCRVAGWGRTGVL---------K---PGS--DTLQEVKLRLMDPQACS-H----FR--- 158
1lmwb.pdb 133 TSCEITGFGKENST---------D--YLYP--EQLKMTVVKLISHRECQ-QPHYYGS--- 175
1mcta.pdb 114 TECLISGWGNTKSS---------G--SSYP--SLLQCLKAPVLSNSSCK-S--S-YP--- 153
1npma.pdb 116 QKCIISGWGTVTSP---------Q--ENFP--NTLNCAEVKIYSQNKCE-R--A-YP--- 155
1ppb.pdb 134 YKGRVTGWGNLKETWT----ANVG--KGQP--SVLQVVNLPIVERPVCK-D--S-TR--- 178
1sgt.pdb 108 GTFTVAGWGANREG---------G---SQQ--RYLLKANVPFVSDAACR-S--A-YG--- 146
1ton.pdb 116 STCLASGWGSTNPS---------E--MVVS--HDLQCVNIHLLSNEKCIET--Y-KD--- 156
1trma.pdb 114 TQCLISGWGNTLSS---------G--VNEP--DLLQCLDAPLLPQADCE-A--S-YP--- 153
2pka.pdb 119 STCEASGWGSIEPGPD-------D--FEFP--DEIQCVQLTLLQNTFCA-D--A-HP--- 160
2ptn.pdb 114 TQCLISGWGNTKSS---------G--TSYP--DVLKCLKAPILSDSSCK-S--A-YP--- 153
2tbs.pdb 114 TMCTVSGWGNTMSS---------TAD---S--DKLQCLNIPILSYSDCN-D--S-YP--- 152
3est.pdb 125 SPCYITGWGLTRTN---------G---QLA--QTLQQAYLPTVDYAICS-SSSY------ 163
3rp2a.pdb 121 AMCWAAGWGKTGVR---------D---PTS--YTLREVELRIMDEKACV-D----YR--- 158
G G C
1a0ja.pdb 154 -------GQI-TSNMFCAGFM-E------G--GKDSCQGDSGGPVVCN------GQLQGV 190
1a0la.pdb 167 YTGDD-VRIV-RDDMLCAGN---------T--RRDSCQGDSGGPLVCKV--NGTWLQAGV 211
1a5ha.pdb 174 -------RTV-TDNMLCAGDT-RSGGPQAN--LHDACQGDSGGPLVCLN--DGRMTLVGI 220
1a5ia.pdb 187 -------KTV-TNNMLCAGDT-RSGEIYPN--VHDACQGDSGGPLVCMN--DNHMTLLGI 233
1a7s.pdb 151 -----------RPNNVCTGVL-T------R--RGGICNGDGGTPLVCE------GLAHGV 184
1ab9.pdb 156 -------TKI-KDAMICAGA---------S--GVSSCMGDSGGPLVCKK--NGAWTLVGI 194
1azza.pdb 157 --------IV-TDGNICIDST--------G--GKGTCNGDSGGPLNYN------GLTYGI 191
1bbr.pdb 179 -------IRI-TDNMFCAGYK-P-G----EGKRGDACEGDSGGPFVMKSPYNNRWYQMGI 224
1dfpa.pdb 162 -------GAI-TERLMCAES---------N--RRDSCKGDSGGPLVCG------GVLEGV 196
1fuja.pdb 156 -----------RPHNICTFVP-R------R--KAGICFGDSGGPLICD------GIIQGI 189
1fxya.pdb 158 -------GKI-TSNMFCVGFL-E------G--GKDSCQGDSGGPVVCN------GQLQGV 194
1hcga.pdb 157 -------FII-TQNMFCAGYD-T------K--QEDACQGDSGGPHVTRF--KDTYFVTGI 197
1hnee.pdb 153 -----------RRSNVCTLVR-G------R--QAGVCFGDSGSPLVCN------GLIHGI 186
1kigh.pdb 162 -------FTI-TPNMFCAGYD-T------Q--PEDACQGDSGGPHVTRF--KDTYFVTGI 202
1klt.pdb 159 -------DFD-HNLQLCVGNP-R------K--TKSAFKGDSGGPLLCA------GVAQGI 195
1lmwb.pdb 176 --------EV-TTKMLCAADP-Q------W--KTDSCQGDSGGPLVCSL--QGRMTLTGI 215
1mcta.pdb 154 -------GQI-TGNMICVGFL-Q------G--GKDSCQGDSGGPVVCN------GQLQGI 190
1npma.pdb 156 -------GKI-TEGMVCAGS--S------N--GADTCQGDSGGPLVCD------GMLQGI 191
1ppb.pdb 179 -------IRI-TDNMFCAGYK-P-D----EGKRGDACEGDSGGPFVMKSPFNNRWYQMGI 224
1sgt.pdb 147 -------NELVANEEICAGYPDT------G--GVDTCQGDSGGPMFRKD-NADEWIQVGI 190
1ton.pdb 157 -------NV--TDVMLCAGEM-E------G--GKDTCAGDSGGPLICD------GVLQGI 192
1trma.pdb 154 -------GKI-TDNMVCVGFL-E------G--GKDSCQGDSGGPVVCN------GELQGI 190
2pka.pdb 161 -------DKV-TESMLCAGYL-P------G--GKDTCMGDSGGPLICN------GMWQGI 197
2ptn.pdb 154 -------GQI-TSNMFCAGYL-E------G--GKDSCQGDSGGPVVCS------GKLQGI 190
2tbs.pdb 153 -------GMI-TNAMFCAGYL-E------G--GKDSCQGDSGGPVVCN------GELQGV 189
3est.pdb 164 -----WGSTV-KNSMVCAGG--D------G--VRSGCQGDSGGPLHCLV--NGQYAVHGV 205
3rp2a.pdb 159 -------YYE-YKFQVCVGSP-T------T--LRAAFMGDSGGPLLCA------GVAHGI 195
C GDsG P G
1a0ja.pdb 191 VSWGY--G--CAQRNKPGVYTKVCNYRSWISSTMS---S-N----------- 223
1a0la.pdb 212 VSWGE--G--CAQPNRPGIYTRVTYYLDWIHHYVP---KK------------ 244
1a5ha.pdb 221 ISWGL--G--CGQKDVPGVYTKVTNYLDWIRDNMR---P------------- 252
1a5ia.pdb 234 ISWGV--G--CGEKDVPGVYTKVTNYLGWIRDNMH---L------------- 265
1a7s.pdb 185 ASFSL--G-PCGR--GPDFFTRVALFRDWIDGVLN---N-PG--P----GPA 221
1ab9.pdb 195 VSWGS--S--TCSTSTPGVYARVTALVNWVQQTLA---A-N----------- 227
1azza.pdb 192 TSFGA--AAGCEA-GYPDAFTRVTYFLDWIQTQTGITP-------------- 226
1bbr.pdb 225 VSWGE--G--CDRDGKYGFYTHVFRLKKWIQKVID---R-LGS--------- 259
1dfpa.pdb 197 VTSGS--R-VCGNRKKPGIYTRVASYAAWIDSVLA----------------- 228
1fuja.pdb 190 DSFVI--W-GCATRLFPDFFTRVALYVDWIRSTLR----------------- 221
1fxya.pdb 195 VSWGD--G--CAQKNKPGVYTKVYNYVKWIKNTIA---A-NS---------- 228
1hcga.pdb 198 VSWGE--G--CARKGKYGIYTKVTAFLKWIDRSMK---T-RG--LPKAK--- 236
1hnee.pdb 187 ASFVR--G-GCASGLYPDAFAPVAQFVNWIDSIIQ----------------- 218
1kigh.pdb 203 VSWGE--G--CARKGKFGVYTKVSNFLKWIDKIMK---A-RA--GAAGS--- 241
1klt.pdb 196 VSYGR--S-DAK---PPAVFTRISHYRPWINQILQ---A-N----------- 226
1lmwb.pdb 216 VSWGR--G--CALKDKPGVYTRVSHFLPWIRSHTK---E-E----------- 248
1mcta.pdb 191 VSWGY--G--CAQKNKPGVYTKVCNYVNWIQQTIA---A-N----------- 223
1npma.pdb 192 TSWGS--D-PCGKPEKPGVYTKICRYTTWIKKTMD----------------- 223
1ppb.pdb 225 VSWGE--G--CDRDGKYGFYTHVFRLKKWIQKVID---Q-FG-E-------- 259
1sgt.pdb 191 VSWGY--G--CARPGYPGVYTEVSTFASAIASAAR---T-L----------- 223
1ton.pdb 193 TSGGA--T-PCAKPKTPAIYAKLIKFTSWIKKVMK---E-NP---------- 227
1trma.pdb 191 VSWGY--G--CALPDNPGVYTKVCNYVDWIQDTIA---A-N----------- 223
2pka.pdb 198 TSWGH--T-PCGSANKPSIYTKLIFYLDWIDDTIT---E-NP---------- 232
2ptn.pdb 191 VSWGS--G--CAQKNKPGVYTKVCNYVSWIKQTIA---S-N----------- 223
2tbs.pdb 190 VSWGY--G--CAEPGNPGVYAKVCIFSDWLTSTMA---S-Y----------- 222
3est.pdb 206 TSFVSRLG--CNVTRKPTVFTRVSAYISWINNVIA---S-N----------- 240
3rp2a.pdb 196 VSYGH--P-DAK---PPAIFTRVSTYVPWINAVIN----------------- 224
s w
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################