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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 12:04:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/seatoxin.html
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#====================================
# Aligned_structures: 5
#   1: 1ahl.pdb
#   2: 1apf.pdb
#   3: 1atx.pdb
#   4: 1bds.pdb
#   5: 1sh1.pdb
#
# Length:         62
# Identity:        6/ 62 (  9.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     10/ 62 ( 16.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           32/ 62 ( 51.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ahl.pdb                1  GVSCLCDSDG-PS--VRGNTLSGTLWLYPSGCP---S-GWHNCK---AHGPTIGWCCK-Q   49
1apf.pdb                1  GVPCLCDSDG-PR--PRGNTLSGILWFYPSGCP---S-GWHNCK---AHGPNIGWCCK-K   49
1atx.pdb                1  GAACLCKSDGPNT---RGNSMSGTIWVFG--CP---SG-WNNCEGRA----IIGYCCKQ-   46
1bds.pdb                1  AAPCFCSGK----------PGRGDLWILRGTCPGGY--GYTS-----NCYKWPNICCY-P   42
1sh1.pdb                1  -AACKCDDEG---PDIRTAPLTGTVDLGS--CN---A-GWEKCA---SYYTIIADCCR-K   46
                              C C                G  w     Cp      w            i  CC   

1ahl.pdb                   --     
1apf.pdb                   --     
1atx.pdb                   --     
1bds.pdb               43  -H   43
1sh1.pdb               47  KK   48
                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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