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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:09:03 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/rvt.html
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#====================================
# Aligned_structures: 2
#   1: 1mml.pdb
#   2: 1vrta.pdb
#
# Length:        265
# Identity:       59/265 ( 22.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     59/265 ( 22.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           47/265 ( 17.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1mml.pdb                1  TWLSDFPQAWAETGGMGLAVR-QAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLL   59
1vrta.pdb               1  ---------------------PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEME   39
                                                        LK        KQ P   E             

1mml.pdb               60  DQGILVPCQ--SPWNTPLLPVKKPGTN-DYRPVQDLREVNKRVEDIHP--TVPNPYNLLS  114
1vrta.pdb              40  KEGKISKIGPENPYNTPVFAI-KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIP--H-PA   95
                             G         P NTP     K       R   D RE NKR  D               

1mml.pdb              115  GLPPSHQ-WYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI-----SGQLTWTRLPQG  168
1vrta.pdb              96  GLKK--KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSI----NNETPGIRYQYNVLPQG  149
                           GL        TVLD  DA F   L        AF                      LPQG

1mml.pdb              169  FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAAT-SELDCQQGTRALLQTLGNL  227
1vrta.pdb             150  WKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRW  209
                            K SP  F       L  FR Q PD    QY DDL                 L Q L   

1mml.pdb              228  GYRAS-AKKAQICQKQVKYLGYLLK  251
1vrta.pdb             210  GLTTPDKKHQ--KEPPFLWMGYELH  232
                           G      K            GY L 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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