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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:08:47 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/rvintegrase.html
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#====================================
# Aligned_structures: 2
#   1: 1biza.pdb
#   2: 1vsd.pdb
#
# Length:        173
# Identity:       29/173 ( 16.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     29/173 ( 16.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           53/173 ( 30.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1biza.pdb               1  VDS---SPGIWQLDCTHLEG-----KVILVAVHVASGYIEAEVIPAETGQETAYFLLKLA   52
1vsd.pdb                1  ---GLGPLQIWQTDFTLEP-RMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAI   56
                                    IWQ D T             V V  AS  I        T            

1biza.pdb              53  GRWP-VKTVHTDNGSNFTSTTVKAACWWAGIKQEFG---------GVIESMNKELKKIIG  102
1vsd.pdb               57  AVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTT-GIPGNSQGQAMVERANRLLKDKIR  115
                                 K   TDNGS FTS          GI                 E  N  LK  I 

1biza.pdb             103  QVRDQAE--------HLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDI  147
1vsd.pdb              116  VLAEGDGFMKRIPTSKQGELLAKAMYALNHF----------------------  146
                                                  A    N                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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