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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 12:03:57 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/rub.html
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#====================================
# Aligned_structures: 5
#   1: 1rb9.pdb
#   2: 1rdg.pdb
#   3: 1zrp.pdb
#   4: 4rxn.pdb
#   5: 6rxn.pdb
#
# Length:         54
# Identity:       16/ 54 ( 29.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     28/ 54 ( 51.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           10/ 54 ( 18.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1rb9.pdb                1  MKKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEAA--   52
1rdg.pdb                1  MDIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ--   52
1zrp.pdb                1  -AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED   53
4rxn.pdb                1  MKKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVGKDEFEEVEE   54
6rxn.pdb                1  MQKYVCNVCGYEYDPAEH-------DNVPFDQLPDDWCCPVCGVSKDQFSPA--   45
                             kyvC vCGY YDp  g       pgt F  lPdDW CP CG  K  Fe    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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