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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 01:52:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/rrm.html
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#====================================
# Aligned_structures: 13
#   1: 1a9nb.pdb
#   2: 1b7fa1.pdb
#   3: 1b7fa2.pdb
#   4: 1bnya.pdb
#   5: 1cvja1.pdb
#   6: 1cvja2.pdb
#   7: 1d8za.pdb
#   8: 1d9aa.pdb
#   9: 1ha11.pdb
#  10: 1ha12.pdb
#  11: 1urna.pdb
#  12: 2u1a.pdb
#  13: 2u2fa.pdb
#
# Length:        141
# Identity:        0/141 (  0.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      3/141 (  2.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           72/141 ( 51.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a9nb.pdb               1  ---------------------IRP---NHTIYINNMNDKIKKE-ELKRSLYALFSQFGHV   35
1b7fa1.pdb              1  -----------------------S---NTNLIVNYLPQDM-----TDRELYALFRAIGPI   29
1b7fa2.pdb              1  G-E----SIK-----------------DTNLYVTNLPRTI-----TDDQLDTIFGKYGSI   33
1bnya.pdb               1  ----------------EANLQEEE---VRTLFVSGLPLDIK--PRELYLLFRPFKGYEGS   39
1cvja1.pdb              1  ----------------------------ASLYVGDLHPDV-----TEAMLYEKFSPAGPI   27
1cvja2.pdb              1  P--SLRKSG------------------VGNIFIKNLDKSI-----DNKALYDTFSAFGNI   35
1d8za.pdb               1  ------------------------MDSKTNLIVNYLPQNM-----TQDEFKSLFGSIGDI   31
1d9aa.pdb               1  ---------------------------DANLYVSGLPKTM-----SQKEMEQLFSQYGRI   28
1ha11.pdb               1  -EP----E---------------Q---LRKLFIGGLSFET-----TDESLRSHFEQWGTL   32
1ha12.pdb               1  ----------AH----------LT---VKKIFVGGIKEDT-----EEHHLRDYFEQYGKI   32
1urna.pdb               1  -----------------AVPETRP---NHTIYINNLNEKIKKD-ELKKSLHAIFSRFGQI   39
2u1a.pdb                1  ------------MAPAQPLSENPP---NHILFLTNLPEET-----NELMLSMLFNQFPGF   40
2u2fa.pdb               1  ---------------------------AHKLFIGGLPNYL-----NDDQVKELLTSFGPL   28
                                                                                f      

1a9nb.pdb              36  VDIVALKTM------KMRGQAFVIFKELGSSTNALRQLQGFP-F--YGKPMRIQYAKT-D   85
1b7fa1.pdb             30  NTCRIMRD-YKTGYS--YGYAFVDFTSEMDSQRAIKVLNGIT-V--RNKRLKVSYARP--   81
1b7fa2.pdb             34  VQKNILRD-KLTGRP--RGVAFVRYNKREEAQEAISALNNVI-PEGGSQPLSVRLA----   85
1bnya.pdb              40  LIKLTSK----------QPVGFVSFDSRSEAEAAKNALNGIR-F--DPEIPQTLRLEF-A   85
1cvja1.pdb             28  LSIRVCRD-MITRRS--LGYAYVNFQQPADAERALDTMNFDV-I--KGKPVRIMWSQR--   79
1cvja2.pdb             36  LSCKVVCDEN---GS--KGYGFVHFETQEAAERAIEKMNGML-L--NDRKVFVGRFKS--   85
1d8za.pdb              32  ESCKLVRD-KITGQS--LGYGFVNYSDPNDADKAINTLNGLK-L--QTKTIKVSYARP--   83
1d9aa.pdb              29  ITSRILLD-QATGVS--RGVGFIRFDKRIEAEEAIKGLNGQK-PLGAAEPITVKFANN--   82
1ha11.pdb              33  TDCVVMRD-PNTKRS--RGFGFVTYATVEEVDAAMNAR-PHK-V--DGRVVEPKRAV---   82
1ha12.pdb              33  EVIEIMTD-RGSGKK--RGFAFVTFDDHDSVDKIVIQK-YHT-V--NGHNCEVRKAL---   82
1urna.pdb              40  LDILVSRSL------KMRGQAFVIFKEVSSATNALRSMQGFP-F--YDKPMRIQYAKT-D   89
2u1a.pdb               41  KEVRLVP-G------R-HDIAFVEFDNEVQAGAARDALQGFKIT--QNNAMKISFAKK--   88
2u2fa.pdb              29  KAFNLVKD-SATGLS--KGYAFCEYVDINVTDQAIAGLNGMQ-L--GDKKLLVQRASVG-   81
                                                f           a                          

1a9nb.pdb              86  SDIISKMRG------------   94
1b7fa1.pdb             82  -G-------------------   82
1b7fa2.pdb                 ---------------------     
1bnya.pdb              86  KANTKMAKNKLV---------   97
1cvja1.pdb             80  -D-------------------   80
1cvja2.pdb             86  -RKER----------------   89
1d8za.pdb              84  -S---------SA-----SIR   89
1d9aa.pdb              83  -P--------------SQ---   85
1ha11.pdb              83  ---------------SRE---   85
1ha12.pdb                  ---------------------     
1urna.pdb              90  SDIIAKM--------------   96
2u1a.pdb                   ---------------------     
2u2fa.pdb              82  -A----------KNA------   85
                                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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