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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 16:41:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/rnasemam.html
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#====================================
# Aligned_structures: 6
#   1: 1agi.pdb
#   2: 1b1ia.pdb
#   3: 1bc4.pdb
#   4: 1bsr.pdb
#   5: 1rra.pdb
#   6: 7rsa.pdb
#
# Length:        141
# Identity:       19/141 ( 13.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     33/141 ( 23.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           41/141 ( 29.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1agi.pdb                1  AQD--DYRYIHFLTQHYDAKPKGR--NDEYCFNMMKNRRLTR---PCKDRNTFIHGNKND   53
1b1ia.pdb               1  ----DNSRYTHFLTQHYDAKPQGR--DDRYCESIMRRRGLTS---PCKDINTFIHGNKRS   51
1bc4.pdb                1  -------NWATFQQKHIINT-PII-----NCNTIMD-NNIYIVGGQCKRVNTFIISSATT   46
1bsr.pdb                1  ---KE-SAAAKFERQHMDSGNSP-SSSSNYCNLMMCCRKMTQG--KCKPVNTFVHESLAD   53
1rra.pdb                1  ---AE-SSADKFKRQHMDTEGPSKS-SPTYCNQMMKRQGMTKG--SCKPVNTFVHEPLED   53
7rsa.pdb                1  ---KE-TAAAKFERQHMDSSTSAAS-SSNYCNQMMKSRNLTKD--RCKPVNTFVHESLAD   53
                                      F  qH d           yC   M     t     CK  NTF h     

1agi.pdb               54  IKAICEDRNGQPYR--G-DLRISKSEFQITICKHKGGSSRPPCRYGATEDSRVIVVGCEN  110
1b1ia.pdb              52  IKAICENKNGNPHR--E-NLRISKSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACEN  108
1bc4.pdb               47  VKAICTG------V--INMNVLSTTRFQLNTCTRTSITPR-PCPYSSRTETNYICVKCEN   97
1bsr.pdb               54  VKAVCSQ-KKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGG  112
1rra.pdb               54  VQAICSQ-GQVTCKNGRNNCHKSSSTLRITDCRLKGSSKYPNCDYTTTDSQKHIIIACDG  112
7rsa.pdb               54  VQAVCSQ-KNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEG  112
                             A C                 S s    t C   g s    C Y  t     i v C  

1agi.pdb              111  --GLPVHFDE-SFITPRH---  125
1b1ia.pdb             109  --GLPVHLDQ-SIFRR----P  122
1bc4.pdb               98  --QYPVHFAGI-----GRCP-  110
1bsr.pdb              113  KPSVPVHFDAS-----V----  124
1rra.pdb              113  NPYVPVHFDAS-----V----  124
7rsa.pdb              113  NPYVPVHFDAS-----V----  124
                               PVHfd            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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