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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 21:48:21 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/ricin.html
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#====================================
# Aligned_structures: 7
#   1: 1abra.pdb
#   2: 1apa.pdb
#   3: 1cf5a.pdb
#   4: 1fmp.pdb
#   5: 1mrg.pdb
#   6: 1mrj.pdb
#   7: 1qcia.pdb
#
# Length:        295
# Identity:       28/295 (  9.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     48/295 ( 16.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           64/295 ( 21.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1abra.pdb               1  ---ED-RPIKFSTEGATSQSYKQFIEALRERL-R-G-GLIHDIPVLPDPTTL-QERNRYI   52
1apa.pdb                1  -----INTITFDVGNATINKYATFMKSIHNQAKD-PTLKCYGIPMLPNT--NL--TPKYL   50
1cf5a.pdb               1  -------DVNFDLSTATAKTYTKFIEDFRATL-P-FSHKVYDIPLLYST--I-SDSRRFI   48
1fmp.pdb                1  IFPKQYPIINFTTAGATVQSYTNFIRAVRGRL-TTGADVRHEIPVLPNRVGL-PINQRFI   58
1mrg.pdb                1  -------DVSFRLSGADPRSYGMFIKDLRNAL-P-FREKVYNIPLLLPS--V-SGAGRYL   48
1mrj.pdb                1  -------DVSFRLSGATSSSYGVFISNLRKAL-P-NERKLYDIPLLRSS--L-PGSQRYA   48
1qcia.pdb               1  -----VNTIIYNVGSTTISKYATFLNDLRNEAKD-PSLKCYGIPMLPNT--NT--NPKYV   50
                                     f    at   Y  F    r             IP L              

1abra.pdb              53  TVELSNSDTESIEVGIDVTNAYVVAYRAG----TQSYFLRD-A----P-SSASDYLFT--  100
1apa.pdb               51  LVTLQDSSLKTITLMLKRNNLYVMGYADTYNGKCRYHIFKDISNTTER-NDVMTTLCPNP  109
1cf5a.pdb              49  LLNLTSYAYETISVAIDVTNVYVVAYRTR----DVSYFFKE------SPPEAYNILFK--   96
1fmp.pdb               59  LVELSNHAELSVTLALDVTNAYVVGYRAG----NSAYFFHP-DN-QED-AEAITHLFT--  109
1mrg.pdb               49  LMHLFNRDGKTITVAVDVTNIYIMGYLAD----TTSYFFNE----PAA-ELASQYVFR--   97
1mrj.pdb               49  LIHLTNYADETISVAIDVTNVYIMGYRAG----DTSYFFNE----ASA-TEAAKYVFK--   97
1qcia.pdb              51  LVELQGSNKKTITLMLRRNNLYVMGYSDPFETNKCRYHIFNDISGTER-QDVETTLCPNA  109
                           l  L       i       N Y   Y          y                       

1abra.pdb             101  -G-TDQHSLPFYGTYGDLERWAHQ-SRQQIPLGLQALTHGISFFR-SG---GNDNEEKAR  153
1apa.pdb              110  S-SRVGKNINYDSSYPALEKKVGR-PRSQVQLGIQILNSGIGKIYGV---DSFTEKTEAE  164
1cf5a.pdb              97  --GTRKITLPYTGNYENLQTAAHK-IRENIDLGLPALSSAITTLF-Y-----YNAQSAPS  147
1fmp.pdb              110  -DVQNRYTFAFGGNYDRLEQLAGN-LRENIELGNGPLEEAISALY-YYSTGGTQLPTLAR  166
1mrg.pdb               98  -DARRKITLPYSGDYERLQIAAGK-PREKIPIGLPALDSAISTLL-H-----YDSTAAAG  149
1mrj.pdb               98  -DAMRKVTLPYSGNYERLQTAAGK-IRENIPLGLPALDSAITTLF-Y-----YNANSAAS  149
1qcia.pdb             110  N-SRVSKNINFDSRYPTLESKAGVKSRSQVQLGIQILDSNIGKISGV---MSFTEKTEAE  165
                                         Y  L   a    R    lG   L   I                 a 

1abra.pdb             154  TLIVIIQMVAEAARFRYISNRVRVSIQTGTAFQPDAAMISLENNWDNLSRGVQES--VQD  211
1apa.pdb              165  FLLVAIQMVSEAARFKYIENQVKTNF--NRAFYPNAKVLNLEESWGKISTAIHNA--KNG  220
1cf5a.pdb             148  ALLVLIQTTAEAARFKYIERHVAKYV--ATNFKPNLAIISLENQWSALSKQIFLAQNQGG  205
1fmp.pdb              167  SFIICIQMISEAARFQYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQES--NQG  224
1mrg.pdb              150  ALLVLIQTTAEAARFKYIEQQIQERA--YRDEVPSLATISLENSWSGLSKQIQLAQGNNG  207
1mrj.pdb              150  ALMVLIQSTSEAARYKFIEQQIGKRV--DKTFLPSLAIISLENSWSALSKQIQIASTNNG  207
1qcia.pdb             166  FLLVAIQMVSEAARFKYIENQVKTNF--NRAFNPNPKVLNLQETWGKISTAIHDA--KNG  221
                            l v IQ   EAARf yIe              P      Le  W   S  i       g

1abra.pdb             212  TFPNQVTLTNIRNEPVIVDSLSHPTV-AVLALMLFVCNPPN--------------  251
1apa.pdb              221  ALTSPLELKNANGSKWIVLRVDD--IEPDVGLLKYVNGTC-----QAT-------  261
1cf5a.pdb             206  KFRNPVDLIKPTGQRFQVTNVDSDVVKGNIKLLLNSR-----------ASTADEN  249
1fmp.pdb              225  AFASPIQLQRRNGSKFSVYDVS-I-LIPIIALMVYRCAPPPSSQF----------  267
1mrg.pdb              208  IFRTPIVLVDNKGNRVQITNVTSKVVTSNIQLLLNTR-----------NI-----  246
1mrj.pdb              208  QFESPVVLINAQNQRVTITNVDAGVVTSNIALLLNRN-----------NMA----  247
1qcia.pdb             222  VLPKPLELVDASGAKWIVLRVDE--IKPDVALLNYVGGSC-----QTT-------  262
                               p  L            v          L                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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