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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:01:21 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ribokinase.html
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#====================================
# Aligned_structures: 2
#   1: 1bx4a.pdb
#   2: 1rkd.pdb
#
# Length:        373
# Identity:       64/373 ( 17.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     64/373 ( 17.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           98/373 ( 26.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bx4a.pdb               1  VREN--ILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELV----KKFK   54
1rkd.pdb                1  ----AGSLVVLGSINADHILNLQS-----------FPTPG------------ETVTG-NH   32
                                  L   G    D                                           

1bx4a.pdb              55  VEYHAGGSTQNSIKVAQWMIQQPHK-AATFFGCIGIDKFGEILKRKAAEAHVDA-HYYEQ  112
1rkd.pdb               33  YQVAFGGKGANQAVAAGRSG-----ANIAFIACTGDDSIGESVRQQLATDNIDITPVSVI   87
                                GG   N    A             F  C G D  GE      A    D       

1bx4a.pdb             113  NEQPTGTCAACITG-DNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFLT-  170
1rkd.pdb               88  KGESTGVALIFVNGEGENVIGIHAGANAALSPAL-VEA--QRERIANASALLMQ--L--E  140
                               TG       G           A                     A            

1bx4a.pdb             171  VSPESVLKVAHHASENNRIFTLNLSAPFISQFYKES---LMKVMPYVDILFGNETEAATF  227
1rkd.pdb              141  SPLESVMAAAKIAHQNKTIVALNPAPA---------RELPDELLALVDIITPNETEAEKL  191
                              ESV   A  A  N  I  LN                       VDI   NETEA   

1bx4a.pdb             228  AREQGFETK---DIKEIAKKTQALPKMNSKRQ-RIVIFTQGRDDTIMATESEVTAFAVLD  283
1rkd.pdb              192  TG---IRVENDEDAAKAAQVLHEKG-------IRTVLITLGSRGVWASVNGEGQRVPGF-  240
                                       D    A               R V  T G          E        

1bx4a.pdb             284  QDQK--EIIDTNGAGDAFVGGFLSQLVSDKPLTECIRAGHYAASIIIRRTGCT---FPEK  338
1rkd.pdb              241  ----RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSVPWRE  296
                                    DT  AGD F G     L   KPL E IR  H AA I   R G         

1bx4a.pdb             339  PDFH---------  342
1rkd.pdb              297  E---IDAFLDRQR  306
                                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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