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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:57:38 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/recA.html
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#====================================
# Aligned_structures: 2
#   1: 1g19a.pdb
#   2: 2reb.pdb
#
# Length:        311
# Identity:      189/311 ( 60.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    189/311 ( 60.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            8/311 (  2.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1g19a.pdb               1  MTQTPDREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRG   60
2reb.pdb                1  ---DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG   57
                                   KAL  A  QIEK  GKGS MRLG         I TGS  LD ALG GGLP G

1g19a.pdb              61  RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQP  120
2reb.pdb               58  RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP  117
                           R  EIYGPESSGKTT  L   A AQ  G   AFIDAEHALDP YA KLGVD D LL SQP

1g19a.pdb             121  DTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEHVGLQARLMSQALRKMTGALN  180
2reb.pdb              118  DTGEQALEICDALARSGAVDVIVVDSVAALTPKA-EIE---GLAARMMSQAMRKLAGNLK  173
                           DTGEQALEI D L RSGA D  V DSVAAL P A       GL AR MSQA RK  G L 

1g19a.pdb             181  NSGTTAIFINQLTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRVKVVKNKCLAPFKQ  240
2reb.pdb              174  QSNTLLIFINQ-TGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQ  232
                            S T  IFINQ TGG ALKFYASVR D RR    K G N VG  TRVKVVKNK  APFKQ

1g19a.pdb             241  AEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVAD  300
2reb.pdb              233  AEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAK  292
                           AEF ILYG GI   G L D GV   LI K GAW  Y GE  GQGK NA   L  N   A 

1g19a.pdb             301  EIEKKIKEKLG  311
2reb.pdb              293  EIEKKVRELLL  303
                           EIEKK  E L 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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