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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:08:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ptpase.html
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#====================================
# Aligned_structures: 3
#   1: 1bzha.pdb
#   2: 1rpma.pdb
#   3: 1yfoa.pdb
#
# Length:        316
# Identity:       71/316 ( 22.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    169/316 ( 53.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           57/316 ( 18.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bzha.pdb               1  --------EMEKEFEQIDKS-G-SWAAIYQDIR-HEAS---DFPCRVAKLPKNKNRNRYR   46
1rpma.pdb               1  ---AIRVADLLQHITQMKCAEGYGFKEEYESFF-----EGQSAPWDSAKKDENRMKNRYG   52
1yfoa.pdb               1  KYPPLPVDKLEEEINRRMADDNKLFREEFNALPAC-PI---QATCEAASKEENKEKNRYV   56
                                    le ei q     g  f eey             apc  Akk eNk kNRY 

1bzha.pdb              47  DVSPFDHSRIKLHQ---ED-NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQK  102
1rpma.pdb              53  NIIAYDHSRVRLQTIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHEN  112
1yfoa.pdb              57  NILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQN  116
                           ni pyDHSRv L        sDYINas I gy   n yIatQGP  eT  dFWrMvWeqn

1bzha.pdb             103  SRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIF-EDTNLKLTLISEDIKSYYTVRQLELEN  161
1rpma.pdb             113  TASIIMVTNLVEVGRVKCCKYWPDDT----EI-Y-KDIKVTLIETELLAEYVIRTFAVEK  166
1yfoa.pdb             117  TATIVMVTNLKERKECKCAQYWPDQG----CWTY-GNVRVSVEDVTVLVDYTVRKFCIQQ  171
                           ta ivMvtnl E g  KCaqYWPd         y  n kvtli    l  YtvR f  e 

1bzha.pdb             162  LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRS  221
1rpma.pdb             167  RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSK-S-PPSAGPLVVHCSAGAGRT  224
1yfoa.pdb             172  -----QRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKAC-N-PQYAGAIVVHCSAGVGRT  224
                                 ReI qFHfT WPDfGVP  p g L Fl kVk   s pp aGp VVHCSAG GRt

1bzha.pdb             222  GTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEGAKFIM  281
1rpma.pdb             225  GCFIVIDIMLDMAERE--G-VVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEACL---  278
1yfoa.pdb             225  GTFVVIDAMLDMMHSE--R-KVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY--  279
                           GtF viD mLdmm  e     VDiy  v   R  R  mvQT eQyvFiy A lE  l   

1bzha.pdb             282  GDSSVQDQWKELSHED  297
1rpma.pdb                  ----------------     
1yfoa.pdb                  ----------------     
                                           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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