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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:46:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/psaA_psaB.html
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#====================================
# Aligned_structures: 2
#   1: 1jb0a.pdb
#   2: 1jb0b.pdb
#
# Length:        820
# Identity:      322/820 ( 39.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    322/820 ( 39.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          161/820 ( 19.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1jb0a.pdb               1  RVVVDNDPVPTSFEKWA--KPGHFDRTLARGP-QTTTWIWNLHALAHDFDTH--TSDLED   55
1jb0b.pdb               1  -----------------ATKFPKFSQDLAQ--DPTTRRIWYAIAMAHDFESHDGM-TEEN   40
                                              K   F   LA     TT  IW   A AHDF  H      E 

1jb0a.pdb              56  ISRKIFSAHFGHLAVVFIWLSGMYFHGAKFSNYEAWLADPTGIKPSAQVVWPIV-----G  110
1jb0b.pdb              41  LYQKIFASHFGHLAIIFLWVSGSLFHVAWQGNFEQWVQDPVNTRPIAHAIWD--PQFGKA   98
                              KIF  HFGHLA  F W SG  FH A   N E W  DP    P A   W         

1jb0a.pdb             111  QGILNG-DV-GGGFHGIQITSGLFQLWRASGITNEFQLYCTAIGGLVMAGLMLFAGWFHY  168
1jb0b.pdb              99  AVDAFTQA-GA-SNPVDIAYSGVYHWWYTIGMRTNGDLYQGAIFLLILASLALFAGWLHL  156
                                               SG    W   G      LY  AI  L  A L LFAGW H 

1jb0a.pdb             169  H-KRAPKLEWFQNVESMLNHHLAGLLGLGSLAWAGHQIHVSLPINKLLDAGVAAKDIPLP  227
1jb0b.pdb             157  QPKFRPSLSWFKNAESRLNHHLAGLFGVSSLAWAGHLIHVAIPESRG----QHV----GW  208
                             K  P L WF N ES LNHHLAGL G  SLAWAGH IHV  P                 

1jb0a.pdb             228  HEFILNPSLMAELYPKVDWGFFS-PFFTFNWAAYS------------------DFLTFNG  268
1jb0b.pdb             209  DNFLSTMP-----HPAGL-----APFFTGNWGVYAQNPDTASHVFGTAQGAGTAILTFLG  258
                             F           P         PFFT NW  Y                     LTF G

1jb0a.pdb             269  GLNPVTGGLWLSDTAHHHLAIAVLFIIAGHMYRTNWGIGHSLKEILEAHK-GPFTGA---  324
1jb0b.pdb             259  GFHPQTESLWLTDMAHHHLAIAVLFIVAGHMYRTQFGIGHSIKEMMDA-KDFFG---TKV  314
                           G  P T  LWL D AHHHLAIAVLFI AGHMYRT  GIGHS KE   A K          

1jb0a.pdb             325  ------GHKGLYEVLTTSWHAQLAINLAMMGSLSIIVAQHMYAMPPYPYLATDYPTQLSL  378
1jb0b.pdb             315  EGPFNMPHQGIYETYNNSLHFQLGWHLACLGVITSLVAQHMYSLPPYAFIAQDHTTMAAL  374
                                  H G YE    S H QL   LA  G     VAQHMY  PPY   A D  T   L

1jb0a.pdb             379  FTHHMWIGGFLVVGGAAHGAIFMVRDYDPAMNQNNVLDRVLRHRDAIISHLNWVCIFLGF  438
1jb0b.pdb             375  YTHHQYIAGFLMVGAFAHGAIFLVRDYDPAQNKGNVLDRVLQHKEAIISHLSWVSLFLGF  434
                            THH  I GFL VG  AHGAIF VRDYDPA N  NVLDRVL H  AIISHL WV  FLGF

1jb0a.pdb             439  HSFGLYVHNDTMRAFGRPQDMFSDTGIQLQPVFAQWVQNLHTLAPG--------------  484
1jb0b.pdb             435  HTLGLYVHNDVVVAFGTPEKQIL-----IEPVFAQFIQAAHG----KLLYGFDTLLSNPD  485
                           H  GLYVHND   AFG P            PVFAQ  Q  H                   

1jb0a.pdb             485  ---------GTAPNAAATAS----VAFGGDVVAVGGKVAMMPIVLGTADFMVHHIHAFTI  531
1jb0b.pdb             486  SIASTAWPNYGNVWLP----GWLDAINSGTN--------SLFLTIGPGDFLVHHAIALGL  533
                                                       G                G  DF VHH  A   

1jb0a.pdb             532  HVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNCI  591
1jb0b.pdb             534  HTTTLILVKGALDARGSKLMPDKKDFGYAFPCDGPGRGGTCDISAWDAFYLAMFWMLNTI  593
                           H T LIL KG L AR S L PDK   G  FPCDGPGRGGTC  S WD   L  FWM N I

1jb0a.pdb             592  SVVIFHFSWKMQSDVWGTVAPDGTVSHIT--G-GNFAQSAITINGWLRDFLWAQASQVIG  648
1jb0b.pdb             594  GWVTFYWHWKHLGVW--------------EGNVAQFNESSTYLMGWLRDYLWLNSSQLIN  639
                             V F   WK                         F  S     GWLRD LW   SQ I 

1jb0a.pdb             649  SY----GSALSAYGLLFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNK----LKVAP  700
1jb0b.pdb             640  GYNPFGTNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRW  699
                            Y       LS     FL  H  WA   MFL S RGYWQELIE  VWAH        V  

1jb0a.pdb             701  AIQPRALSIIQGRAVGVAHYLLGGIATTWAFFLARIISVG  740
1jb0b.pdb             700  KDKPVALSIVQARLVGLAHFSVGYILTYAAFLIASTAAKF  739
                              P ALSI Q R VG AH   G I T  AF  A      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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