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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 12:03:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/profilin.html
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#====================================
# Aligned_structures: 5
#   1: 1a0k.pdb
#   2: 1acf.pdb
#   3: 1awia.pdb
#   4: 1ypra.pdb
#   5: 2acg.pdb
#
# Length:        151
# Identity:       14/151 (  9.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     37/151 ( 24.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           33/151 ( 21.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a0k.pdb                1  SWQSYVDD-HLMCDVEGNHLTAAAILGQ---DGS-VWAQSAKF-P--QLKPQEIDGIKKD   52
1acf.pdb                1  SWQTYVDTNLVGT----GAVTQAAILGL---DGN-TWATSAG--F--AVTPAQGTTLAGA   48
1awia.pdb               1  GWNAYIDN-LMAD----GTCQDAAIVGYKDSP-S-VWAAVPG-KTFVNITPAEVGVLVG-   51
1ypra.pdb               1  SWQAYTDN-LIGT----GKVDKAVIYSR---AGDAVWATSGG--L--SLQPNEIGEIVQG   48
2acg.pdb                1  SWQTYVDTNLVGT----GAVTQAAIIGH---DGN-TWATSAG--F--AVSPANGAALANA   48
                           sWq Y D  l       g    AaI g         WA s g        P         

1a0k.pdb               53  FEEPGFLAPTGLFLGGEKYMVIQGEQ--G---AVIRGKKG--------PGGVTIKKTNQA   99
1acf.pdb               49  FNNADAIRAGGFDLAGVHYVTLRA-D--D---RSIYGKKG--------SSGVITVKTSKA   94
1awia.pdb              52  -KDRSSFYVNGLTLGGQKCSVIRDS-LLQDGEFSMDLR--TKSTGGAPTFNVTVTKTDKT  107
1ypra.pdb              49  FDNPAGLQSNGLHIQGQKFMLLRA-D--D---RSIYGRHD--------AEGVVCVRTKQT   94
2acg.pdb               49  FKDATAIRSNGFELAGTRYVTIRA-D--D---RSVYGKKG--------SAGVITVKTSKA   94
                                     G  l G      r          s  g             gV   kT   

1a0k.pdb              100  LVFGFYDEPMTGGQCNLVVERLGDYLIESEL  130
1acf.pdb               95  ILVGVYNEKIQPGTAANVVEKLADYLIGQGF  125
1awia.pdb             108  LVLLMGKEGVHGGLINKKCYEMASHLRRSQY  138
1ypra.pdb              95  VIIAHYPPTVQAGEATKIVEQLADYLIGVQY  125
2acg.pdb               95  ILIGVYNEKIQPGTAANVVEKLADYLIGQGF  125
                                y e    G     ve ladyLi    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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