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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:05:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/pnp.html
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#====================================
# Aligned_structures: 3
#   1: 1ecpa.pdb
#   2: 1pbn.pdb
#   3: 1ula.pdb
#
# Length:        307
# Identity:       25/307 (  8.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    201/307 ( 65.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           86/307 ( 28.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ecpa.pdb               1  ATPHINAE-------------MG-DFADVVLMP-GDPLRAKYIAETFLEDAREVNNVR--   43
1pbn.pdb                1  --MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGS---GLGGL-VNKLTQAQT--FDYSE   52
1ula.pdb                1  --MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGS---GLGGL-TDKLTQAQI--FDYSE   52
                             m ngyt             ht  rpqVa ic s   glggl   kLtqAq   fdy  

1ecpa.pdb              44  -----------G-MLGFTGTYKGRKISVMGHG-------MGIPSCSIYTKELITDFGVKK   84
1pbn.pdb               53  IPNFPESTVPGHAGRLVFGILNGRACVMMQG-RFHMYEGYPFWKVTFPVRVFR-LLGVET  110
1ula.pdb               53  IPNFPRSTVPGHAGRLVFGFLNGRACVMMQG-RFHMYEGYPLWKVTFPVRVFH-LLGVDT  110
                                      h grlvfG lnGRacvmMqg        yp wkvtfpvrvf  llGV t

1ecpa.pdb              85  IIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIR---FKD--------HDFAA--IADF  131
1pbn.pdb              111  LVVTNAAGGLNPNFEVGDIMLIRDHINLP--GFSGENPLRGPNEERFGVRFPAMSDAYDR  168
1ula.pdb              111  LVVTNAAGGLNPKFEVGDIMLIRDHINLP--GFSGQNPLRGPNDERFGDRFPAMSDAYDR  168
                           lvvtnaaGglnP fevgDimlirdhinlp  gfsg   lrg        rfpAm  ayDr

1ecpa.pdb             132  DMVRNAVDAAKALGI--DARVGNLFSADLFYSP---DGEMFDVMEKYGILGVEMEAAGIY  186
1pbn.pdb              169  DMRQKAHSTWKQMGEQRELQEGTYVMLGGPN--FETV-AECRLLRNLGADAVGMSTVPEV  225
1ula.pdb              169  TMRQRALSTWKQMGEQRELQEGTYVMVAGPS--FETV-AECRVLQKLGADAVGMSTVPEV  225
                           dMrq A stwKqmGe  elqeGtyvm  gp      v aecrvl klGadaVgMstvpev

1ecpa.pdb             187  GVAAEFGAKALTICTVSDHIR-----THEQ--TTAAER-QTTFNDMIKIALESVLLGDK-  237
1pbn.pdb              226  IVARHCGLRVFGFSLITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIP-V  284
1ula.pdb              226  IVARHCGLRVFGFSLITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIP-L  284
                           iVArhcGlrvfgfslitnkvi       ka  eevlea kqaaqkleqfvs lmasip  

1ecpa.pdb                  -------     
1pbn.pdb              285  SGHTG--  289
1ula.pdb              285  PDK--AS  289
                                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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