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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:32:15 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/piplc.html
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#====================================
# Aligned_structures: 2
#   1: 1gym.pdb
#   2: 2plc.pdb
#
# Length:        318
# Identity:       78/318 ( 24.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     78/318 ( 24.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           66/318 ( 20.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gym.pdb                1  ASSVNELENWSKWMQPIPDSIPLARISIPGTHDSGTFKLQNPI---KQVWGMTQEYDFRY   57
2plc.pdb                1  -------VTTKQWMSALPDTTNLAALSIPGTHDTMSYNG-DITWTLTKPLAQTQTMSLYQ   52
                                       WM   PD   LA  SIPGTHD                   TQ      

1gym.pdb               58  QMDHGARIFDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKE  117
2plc.pdb               53  QLEAGIRYIDIRAKDN----LNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDE  108
                           Q   G R  DIR            HGP  L   L        QFLK NP ETIIM LK E

1gym.pdb              118  YEDMKGAEDSFSSTFEKKYFVD-PIFLKT------EGNIKLGDARGKIVLLKRYSG--SN  168
2plc.pdb              109  QN---SND-SFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPL  164
                                    SF              F  T           L D RGKI LL         

1gym.pdb              169  -E---PGGYNNFYWPDNETFTTTVNQNA--NVTVQDKYK-VSYDEKVKSIKDTMDETMNN  221
2plc.pdb              165  VINSRKFGMQFG----------------APNQVIQDDYNGPSVKTKFKEIVQTAYQA---  205
                                  G                      N   QD Y   S   K K I  T       

1gym.pdb              222  SEDLNHLYINFTSLSSGGTAWNSPYYYASYINPEIANYIKQKN---PARVGWVIQDYINE  278
2plc.pdb              206  SKADNKLFLNHISATSL---TFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEK  262
                           S   N L  N  S  S       P  YA   N                  G  I D    

1gym.pdb              279  KWSPLLYQEVIRANKSLI  296
2plc.pdb              263  ----QTIKNIIKNNKF--  274
                                     I  NK   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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