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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 08:49:49 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/pgk.html
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#====================================
# Aligned_structures: 4
#   1: 13pka.pdb
#   2: 1php.pdb
#   3: 1qpg.pdb
#   4: 1vpe.pdb
#
# Length:        440
# Identity:      119/440 ( 27.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    223/440 ( 50.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           53/440 ( 12.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


13pka.pdb               1  ---EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGG-SCVLM   56
1php.pdb                1  --MNKKTIRDVDVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGA-KVILA   57
1qpg.pdb                1  SLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLA   60
1vpe.pdb                1  ---EKMTIRDVDLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGA-KVILL   56
                               K  i d DlkgKrV  RVDFNVP   g it d RIraALPTiky le g   v L 

13pka.pdb              57  SHLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCL--NAAD  114
1php.pdb               58  SHLGRPKG----------------KVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKA  101
1qpg.pdb               61  SHLGQPNG----------------ERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEA  104
1vpe.pdb               57  SHLGRPKG----------------EPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKK  100
                           SHLGrPkG                       L pVAKrL eLL   V f    v  ev  

13pka.pdb             115  VVSKMSPGDVVLLENVRFYKEEGS----------K-KAKD-REAMAKILASYGDVYISDA  162
1php.pdb              102  AVDRLNEGDVLLLENVRFYPGEEK----------------NDPELAKAFAELADLYVNDA  145
1qpg.pdb              105  AVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASK-ED-VQKFRHELSSLADVYINDA  162
1vpe.pdb              101  AVEELKEGEVLLLENTRFHPGETK----------------NDPELAKFWASLADIHVNDA  144
                           aV     G V LLEN Rf   E                       ak  aslaD y nDA

13pka.pdb             163  FGTAHRDSATMTGIPKILG-NGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQ  221
1php.pdb              146  FGAAHRAHASTEGIAHY-L-PAVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIG  203
1qpg.pdb              163  FGTAHRAHSSMVGF-D--LPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQ  219
1vpe.pdb              145  FGTAHRAHASNVGIAQF-I-PSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIG  202
                           FGtAHRahas  Gi         AGfLmEKE     K l NP rP  ai GGAKV DKI 

13pka.pdb             222  LLDNMLQRIDYLLIGGAMAYTFLKA-QGYSIGKSKCEESKLEFARSLLKKAEDRKVQVIL  280
1php.pdb              204  VIDNLLEKVDNLIIGGGLAYTFVKA-LGHDVGKSLLEEDKIELAKSFMEKAKEKGVRFYM  262
1qpg.pdb              220  LIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVL  279
1vpe.pdb              203  VITNLMEKADRILIGGAMMFTFLKA-LGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIVL  261
                            idNll k D   IGG ma TF Ka  g   G S  ee k e a  l eKAk kgV   l

13pka.pdb             281  PIDHVCHTEFKAVDSPLIT-EDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGV  339
1php.pdb              263  PVDVVVADRFANDANTKVV-PIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGV  321
1qpg.pdb              280  PVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGV  339
1vpe.pdb              262  PVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGV  321
                           PvD v a  f      k v     IP gw  LDiGP t el        K  vWNGPmGV

13pka.pdb             340  FEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLE  399
1php.pdb              322  FEMDAFAHGTKAIAEALAEA--LDTYSVIGGGDSAA-AVEKFGLADKMDHISTGGGASLE  378
1qpg.pdb              340  FEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTAT-VAKKYGVTDKISHVSTGGGASLE  398
1vpe.pdb              322  FEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAA-AVNKFGLEDKFSHVSTGGGASLE  380
                           FE   fa GTka a a            igGGd aa a  k G  dk sHvSTGGGASLE

13pka.pdb             400  LLEGKTLPGVTVLDDK----  415
1php.pdb              379  FMEGKQLPGVVALEDK----  394
1qpg.pdb              399  LLEGKELPGVAFLSE-KK--  415
1vpe.pdb              381  FLEGKELPGIASMRIK--KA  398
                            lEGK LPGv  l       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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