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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:55:13 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/pcd.html
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#====================================
# Aligned_structures: 2
#   1: 3pcga.pdb
#   2: 3pcgm.pdb
#
# Length:        251
# Identity:       51/251 ( 20.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     51/251 ( 20.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           69/251 ( 27.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


3pcga.pdb               1  ----PIELLPETPSQ-----TAGPYV-HIGLALEAAGNPT----------RDQ-------   33
3pcgm.pdb               1  PAQDNSRFVIRDR--NWHPKALTPDYKT---SIARSPR--QALVSIPQSISETTGPNFSH   53
                                                  P                                    

3pcga.pdb              34  ----EIWNRLAKP----DAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYN-   84
3pcgm.pdb              54  LGFGAHDHDLL--LNFGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRH-KND  110
                                    L          GE I   G V D  G  V     E WQA A G Y    N 

3pcga.pdb              85  --LEN---AFNSFGRTATTFDAGEWTLHTVKPGVVNNAA--GVPMAPHINISLFARGINI  137
3pcgm.pdb             111  RYLAPLDPNFGGVGRCLTD-SDGYYSFRTIKPGPYPWRNGPNDWRPAHIHFGISGPSI--  167
                             L      F   GR  T    G     T KPG              HI        I  

3pcga.pdb             138  --HLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKRCEV---D-GKTAYRFDIRIQG  191
3pcgm.pdb             168  ATKLITQLYFEGD-PLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRG  226
                              L T LYF         CP    I  P     LIAK            AYRFDI   G

3pcga.pdb             192  EGETVFFDF--  200
3pcgm.pdb             227  ----QRKTHFE  233
                                      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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