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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:45:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/oxidored_FMN.html
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#====================================
# Aligned_structures: 2
#   1: 1oyc.pdb
#   2: 2tmda.pdb
#
# Length:        426
# Identity:       79/426 ( 18.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     79/426 ( 18.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          113/426 ( 26.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1oyc.pdb                1  SFVKDFKPQALGDTNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQR   60
2tmda.pdb               1  -------ARDPKHDILFEPIQIGPKTLRNRFYQVPHCIGAG-----SDKPGFQSAHRSVK   48
                                          LF PI IG   L  R    P                         

1oyc.pdb               61  AQ-RPG-TMIITEGAFISPQAGGY--DNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLW  116
2tmda.pdb              49  AEGG--WAALNTEYCSINPESDD-THRLSARIWDEGDVRNLKAMTDEVHKYGALAGVELW  105
                           A          TE   I P             W E             H       V LW

1oyc.pdb              117  VLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKK--ANNPQHSLTKDEIKQYIKEYV  174
2tmda.pdb             106  YGGAHAPNM---ESRATPRGPSQY---ASE-------FETLSYCKEMDLSDIAQVQQFYV  152
                             G  A               S       E                     I Q    YV

1oyc.pdb              175  QAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEA  234
2tmda.pdb             153  DAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHA  212
                            AAK S  AG D V    A  YL  QFL P  N RTD YGGS ENRARF LE       A

1oyc.pdb              235  IGHE--KVGLRLSPYGVFN----SMSGGAETGIVAQYAYVAGELEKRAKAGKR-LAFVHL  287
2tmda.pdb             213  VG-SDCAIATRFGVDT---VYGPGQIEA-----EVDGQKFVEMAD--S-----LVDMWDI  256
                            G        R                                                 

1oyc.pdb              288  VEPR-VTNPFLTEGEGE---YEG-------GSNDFVYSIWKGPVIRAGNFALHPEVVREE  336
2tmda.pdb             257  TI-GDIAEWGED-----AGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRY-TDPEKMIEI  309
                                                              V    K PV   G     PE   E 

1oyc.pdb              337  VKDKR--TLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKL  394
2tmda.pdb             310  VTKG-YADIIGCARPSIADPFLPQKVEQGRY-----------------------------  339
                           V        IG  R  I  P L    E G                               

1oyc.pdb              395  GWDKK-  399
2tmda.pdb             340  -----D  340
                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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