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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 08:22:17 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/oat.html
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#====================================
# Aligned_structures: 4
#   1: 1d7ua.pdb
#   2: 1dtya.pdb
#   3: 1gtxa.pdb
#   4: 2oata.pdb
#
# Length:        526
# Identity:       35/526 (  6.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     84/526 ( 16.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          156/526 ( 29.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d7ua.pdb               1  ----------LND---DATFWRNARQHLVRYGG----TFE-PMIIE-RAKGSFVYDADGR   41
1dtya.pdb               1  ------------M---TTDDLAFDERHIWHP-YTSMTSPLPVYPVV-SAEGCELILSDGR   43
1gtxa.pdb               1  FDYDGPLMKTEVPGPRSRELMKQLNIIQNAEA------VH-FFCNYEESRGNYLVDVDGN   53
2oata.pdb               1  ----------GPP--TSDDIFEREYKYGAHNY-----HPL-PVALE-RGKGIYLWDVEGR   41
                                                                             G  l d dGr

1d7ua.pdb              42  AILDFTSGQMSAVLGHCHPEIVSVIGE-YAGKL--DHLFS-G-MLSRPVVDLATR-LANI   95
1dtya.pdb              44  RLVDGMSSWWAAIHGYNHPQLNAAMKS-QIDAM--SHVMF-GEITHAPAIELCRK-LVAM   98
1gtxa.pdb              54  RMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSV  112
2oata.pdb              42  KYFDFLSSYSAVNQGHCHPKIVNALKS-QVDKL--TLTSR-A-FYNNVLGEYEEY-ITKL   95
                              D  S       G  HP  v      q                     e     l   

1d7ua.pdb              96  TPPGLDRALLLSTGAESNEAAIRMAKLVTG--------------------------K-YE  128
1dtya.pdb              99  TPQPLECVFLADSGSVAVEVAMKMALQYWDAKG--E-------------------AR-DR  136
1gtxa.pdb             113  APKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQ-SAFSKEELETCMINQAPGCPDYS  171
2oata.pdb              96  FN--YHKVLPMNTGVEAGETACKLARKWGYTVK-GIQ------------------KYKAK  134
                            p           G    E A k a                                   

1d7ua.pdb             129  IVGFAQSWHGMTGAAASATY--S-A-GRKGVGP-AAVGSFAIPAPF----TY-RPRFERN  178
1dtya.pdb             137  FLTFRNGYHGDTFGAMSVCDPDNS--MHSLWKGY-LPENLFAPAPQ--S-RMDGE-----  185
1gtxa.pdb             172  ILSFMGAFHGRTMGCLATTH--SKAIHKIDIP---SFDWPIAPFPRLKYPLE--------  218
2oata.pdb             135  IVFAAGNFWGRTLSAISSST--D-PTSYDGFGP-FMPGFDIIPYN---------------  175
                           i  f    hG T  a s                         P p               

1d7ua.pdb             179  GAY-------DYLAELDYAFDLIDRQSSG---NLAAFIAEP-ILSSGGIIELPDGYMAAL  227
1dtya.pdb             186  --W--------DER-DMVGFARLMAAHRH---EIAAVIIEPIVQGAGGMRMYHPEWLKRI  231
1gtxa.pdb             219  ---EFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFRKL  274
2oata.pdb             176  ---------------DLPALERALQ-D-P---NVAAFMVEP-IQGEAGVVVPDPGYLMGV  214
                                                             Aa i EP iq  gG            

1d7ua.pdb             228  KRKCEARGMLLILDEAQTGVGRTGTMFACQRDGV--TPDILTLSKTLGAG-LPLAAIVTS  284
1dtya.pdb             232  RKICDREGILLIADEIATGFGRTGKLFACEHAEI--APDILCLGKALTGGTMTLSATLTT  289
1gtxa.pdb             275  RDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDAADVMTFSKKMM-----TGGFFHK  329
2oata.pdb             215  RELCTRHQVLFIADEIQTGLARTGRWLAVDYENV--RPDIVLLGKALSGGLYPVSAVLCD  272
                           r  c   g l i DE qTG grTG   A         pDi  l K l        a    

1d7ua.pdb             285  AAIEERAHEL-G--Y-----LFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLR  336
1dtya.pdb             290  REVAETISDGEAGCF-----MHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLR  344
1gtxa.pdb             330  EEFR-----------PNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLL  378
2oata.pdb             273  DDIMLTIK----------PGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILR  322
                                                   T  g Pl        l       l   a   g  Lr

1d7ua.pdb             337  RGLLDLMERF-DCIGDVRGRGLLLGVEIVKDRRTKEPA----DGLGAKITRECMNLGLSM  391
1dtya.pdb             345  EQLAPARD-A-EMVADVRVLGAIGVVETT--------H----PVNMAALQKFFVEQGVWI  390
1gtxa.pdb             379  TGLLDLQARYPQFISRVRGRGTFCSFDTP--------D----ESIRNKLISIARNKGVML  426
2oata.pdb             323  NELMKL---PSDVVTAVRGKGLLNAIVIK--------ETKDW--DAWKVCLRLRDNGLLA  369
                             L  l          VRg G                          k        G   

1d7ua.pdb             392  NIVQLPGMG-GVFRIAPPLTVSEDEIDLGLSLLGQAIERA-----L  431
1dtya.pdb             391  RPFG------KLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ-  429
1gtxa.pdb             427  GGCG-----DKSIRFRPTLVFRDHHAHLFLNIFSDILADF-----K  462
2oata.pdb             370  KPTH-----GDIIRFAPPLVIKEDELRESIEIINKTILSF------  404
                                       ir  Ppl                           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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