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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 19:55:58 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/msb.html
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#====================================
# Aligned_structures: 8
#   1: 1esl.pdb
#   2: 1ixxa.pdb
#   3: 1ixxb.pdb
#   4: 1msba.pdb
#   5: 1qdda.pdb
#   6: 1rdo1.pdb
#   7: 1tn3.pdb
#   8: 2afp.pdb
#
# Length:        197
# Identity:        7/197 (  3.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      9/197 (  4.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          115/197 ( 58.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1esl.pdb                1  -------------------------------WSYNTSTEAMTYDEASAYCQQRY--THLV   27
1ixxa.pdb               1  -------------DCLS-GWSS-YE-----GHCYKAFEKYKTWEDAERVCTEQAKGAHLV   40
1ixxb.pdb               1  -------------DCPS-DWSS-YE-----GHCYKPFSEPKNWADAENFCTQQHAGGHLV   40
1msba.pdb               1  -----------------------SG-----KKFFVTNHERMPFSKVKALCSELR--GTVA   30
1qdda.pdb               1  -QAAATELPAAAASCPE-GTNA-YR-----SYCYYFNEDRETWVDADLYCQNMNS-GNLV   51
1rdo1.pdb               1  -------------------------------KYFMSSVRRMPLNRAKALCSELQ--GTVA   27
1tn3.pdb                1  ----------------ALQTVCL-KGTKVHMKCFLAFTQTKTFHEASEDCISRG--GTLS   41
2afp.pdb                1  Q----RAGP----NCPA-GWQP-LG-----DRCIYYETTAMTWALAETNCMKLG--GHLA   43
                                                                        a   C          

1esl.pdb               28  AIQNKEEIEYLNSILS---YS--PSYYWIGIRK-VNN--VWVWV-GTQKPLTEEA-----   73
1ixxa.pdb              41  SIESSGEADFVAQLVTQNM-KRLDFYIWIGLRV-Q----------GK-------V-KQCN   80
1ixxb.pdb              41  SFQSSEEADFVVKLAFQTF-G--HSIFWMGLSN------------VW---N---Q-CN--   76
1msba.pdb              31  IPRNAEENKAIQEVAK--------TSAFLGITD-EVTEGQFMYV-TG-GRLT--Y-----   72
1qdda.pdb              52  SVLTQAEGAFVASLIKESGTD--DFNVWIGLHD-PKKNRAWHWS-SG-SLVS--Y-----   99
1rdo1.pdb              28  TPRNAEENRAIQNVAK--------DVAFLGITD-QRTENVFEDL-TG-NRVR--Y-----   69
1tn3.pdb               42  TPQTGSENDALYEYLRQSV-G-NEAEIWLGLND-MAAEGTWVDM-TG-ARIA--Y-----   89
2afp.pdb               44  SIHSQEEHSFIQTLN--------AGVVWIGGSAC-LQAGAWTWSD-G-TP-M--NF----   85
                                 E                      G                              

1esl.pdb               74  -----------KN-------WAP-----GEPN---NRQK--DEDCVEIYIKREKDVGMWN  105
1ixxa.pdb              81  SEWSDGSSVSYEN-------W--IE---A-----------ESKTCLGLEKE-T-DFRKWV  115
1ixxb.pdb              77  WQWSNAAMLRYKA-------W--AE---------------E-SYCVYFKS----TNNKWR  107
1msba.pdb              73  -----------SN-------WKK-----DEPN---DH--GSGEDCVTIVD-----NGLWN   99
1qdda.pdb             100  -----------KS-------WGI-----GAPS---S---VNPGYCVSLTSS-T-GFQKWK  128
1rdo1.pdb              70  -----------TN-------WNE-----GEPN---NV--GSGENCVVLLT-----NGKWN   96
1tn3.pdb               90  -----------KN-------WET--EITAQPDGGK------TENCAVLSGA---ANGKWF  120
2afp.pdb               86  -----------RSWCSTKPDD--VL----------------AACCMQMTAA-AD--QCWD  113
                                               w                       C             W 

1esl.pdb              106  DERCSKKKLALCYTA--  120
1ixxa.pdb             116  NIYCGQQNPFVCEA---  129
1ixxb.pdb             108  SRACRMMAQFVCEFQA-  123
1msba.pdb             100  DISCQASHTAVCEFPA-  115
1qdda.pdb             129  DVPCEDKFSFVCKFKN-  144
1rdo1.pdb              97  DVPCSDSFLVVCEFS--  111
1tn3.pdb              121  DKRCRDQLPYICQFGIV  137
2afp.pdb              114  DLPCPASHKSVCAMTF-  129
                              C       C     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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