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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 14:45:22 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/mmp.html
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#====================================
# Aligned_structures: 6
#   1: 1bqoa.pdb
#   2: 1bqqm.pdb
#   3: 1hfc.pdb
#   4: 1mmpa.pdb
#   5: 1mnc.pdb
#   6: 456ca.pdb
#
# Length:        185
# Identity:       56/185 ( 30.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     75/185 ( 40.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           32/185 ( 17.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bqoa.pdb               1  FRTFPGIP--KWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRL-----   53
1bqqm.pdb               1  ---IQ-GL--KWQHNEITFCIQNYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYI   54
1hfc.pdb                1  -------P--RWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKV-----   46
1mmpa.pdb               1  YSLFPNSP--KWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKV-----   53
1mnc.pdb                1  --------GPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTGI-----   47
456ca.pdb               1  ------TL--KWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRL-----   47
                                     kW     TyrI nYTp      v  a  kA   W    PL F        

1bqoa.pdb              54  ----YEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTK-D-  107
1bqqm.pdb              55  REGH-EKQADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTVRNE  113
1hfc.pdb               47  ----SEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTN-N-  100
1mmpa.pdb              54  ----VWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTD-G-  107
1mnc.pdb               48  ----SQGEADINIAFYQRDHGDGSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTN-T-  101
456ca.pdb              48  ----HDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTS-S-  101
                                 g ADImI F    HgD  PFDGp   LAHA  PG   gGDaHFD  E WT    

1bqoa.pdb             108  -TTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGP  166
1bqqm.pdb             114  DLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFYQWMDT-ENFVLPDDDRRGIQQLYGG  172
1hfc.pdb              101  -FREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGD---VQLAQDDIDGIQAIYGR  156
1mmpa.pdb             108  SSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDP-QNFKLSQDDIKGIQKLYGK  166
1mnc.pdb              102  -SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRET-SNYSLPQDDIDGIQAIYG-  158
456ca.pdb             102  -SKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGK-SHFMLPDDDVQGIQSLYGP  159
                                n   vA HE GHsLGl HS d  A M P Y          L  DD  GIQ  YG 

1bqoa.pdb             167  --PPD  169
1bqqm.pdb             173  ES---  174
1hfc.pdb              157  --S--  157
1mmpa.pdb                  -----     
1mnc.pdb                   -----     
456ca.pdb             160  --G--  160
                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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