################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:20:31 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/mdd.html
################################################################################################
#====================================
# Aligned_structures: 3
#   1: 1buca.pdb
#   2: 1ivha.pdb
#   3: 3mdda.pdb
#
# Length:        401
# Identity:       85/401 ( 21.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    252/401 ( 62.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           31/401 (  7.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1buca.pdb               1  -----MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIY--DKELIDELLSLGITGA   53
1ivha.pdb               1  VDDA-I-NGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGI   58
3mdda.pdb               1  ----GFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEY--PVPLLKRAWELGLMNT   54
                                  f Lte Q  f  ta kF  e laP a E Dr gey    el k l  LG  g 

1buca.pdb              54  YFEEKYGGSGDDGGDVLSYILAVEELAKYDA-----GVAITLSATVSLCANPIWQFGTEA  108
1ivha.pdb              59  TAPVQYGGSG---LGYLEHVLVMEEISRASG-----AVGLSYGAHSNLCINQLVRNGNEA  110
3mdda.pdb              55  HIPESFGGL---GLGIIDSCLITEELAYGC-TGVQTAIE-----ANTLGQVPLIIGGNYQ  105
                             pe yGGs    lg l   L  EEla         av         Lc npl   Gnea

1buca.pdb             109  QKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAAD  168
1ivha.pdb             111  QKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKG-NHYILNGNKFWITNGPDAD  169
3mdda.pdb             106  QQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGD-EYIINGQKMWITNGGKAN  164
                           QkeKyL  l eg   gA   tEPnAGsDv g ktkAeKkg   YilNG K wITNGg Ad

1buca.pdb             169  IYIVFAMTDKSK---GNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPA  225
1ivha.pdb             170  VLIVYAKTDLAA-VPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPA  228
3mdda.pdb             165  WYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPK  224
                            yiv A tD      as giTaFIvE gtPGf  gkKedkmG r S T elvFeDvkvPa

1buca.pdb             226  ENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSI  285
1ivha.pdb             229  ANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLM  288
3mdda.pdb             225  ENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGI  284
                           eN Lg EgkGfkiaM tlD  R  vAagalGlaqaaLd a  Y   R  FGk l  fQ i

1buca.pdb             286  SFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGY  345
1ivha.pdb             289  QGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGN  348
3mdda.pdb             285  SFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGN  344
                           sfklADM m  eaaR  vy aA   deG   t daaiak yaad A qvatdavQ FGGn

1buca.pdb             346  GYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR---  383
1ivha.pdb             349  GYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNAD--  387
3mdda.pdb             345  GFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGRYK  385
                           Gy  eyPv r mRDAKiyqIyeGT evqr vigra      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################