################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:13:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/malt_amylase_NC.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1bvza.pdb
#   2: 1smaa.pdb
#
# Length:        599
# Identity:      261/599 ( 43.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    261/599 ( 43.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           25/599 (  4.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bvza.pdb               1  MLLEAIFHEAKGSYAYPISETQLRVRLRAKKGDVVRCEVLYADRYAS-PE-EELAHALAG   58
1smaa.pdb               1  MRKEAIHHRSTDNFAYAYDSETLHLRLQTKKNDVDHVELLFGDPYEWHDGAWQFQTMPMR   60
                           M  EAI H      AY      L  RL  KK DV   E L  D Y               

1bvza.pdb              59  KAGSDERFDYFEALLECSTKRVKYVFLLTGPQGEAVYFGETGFSAERSKA-----GVFQY  113
1smaa.pdb              61  KTGSDGLFDYWLAEVKPPYRRLRYGFVLRAG-GEKLVYTEKGFYHEAP--SDDTAYYFCF  117
                           K GSD  FDY  A       R  Y F L    GE     E GF  E           F  

1bvza.pdb             114  AYIHRSEVFTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKD--ARPRHDSFYGGD  171
1smaa.pdb             118  PFLHRVDLFQAPDWVKDTVWYQIFPERFANGNPAIS-PK-GARPWGSEDPT-PTSFFGGD  174
                              HR   F  P W K  V YQIFPERFANG P    P                SF GGD

1bvza.pdb             172  LKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHR  231
1smaa.pdb             175  LQGIIDHLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKETLKTLVKRCHE  234
                           L G ID L YL  LG T  Y TPIF  PS HKYDTADY  IDP FGD  T   LV   H 

1bvza.pdb             232  RGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVP  291
1smaa.pdb             235  KGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRPNYD-TFAFVP  293
                            GI   LDAVFNH G  F  F DVL  G  SRYKDWF I  FP     R NY      VP

1bvza.pdb             292  AMPKLRTENPEVKEYLFDVARFWME-QGIDGWRLDVANEVDHAFWREFRRLVKSLNPDAL  350
1smaa.pdb             294  HMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHQFWREFRQAVKALKPDVY  353
                            MPKL T  PEVK YL DVA  W     IDGWRLDVANE DH FWREFR  VK L PD  

1bvza.pdb             351  IVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAA  410
1smaa.pdb             354  ILGEIWHDAMPWLRGDQFDAVMNYPLADAALRFFAKEDMSASEFADRLMHVLHSYPKQVN  413
                           I GEIWHDA  WL GDQFD VMNY       RFFA     A  F   L      YP Q  

1bvza.pdb             411  QGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAGATDPDCRR  470
1smaa.pdb             414  EAAFNLLGSHDTPRLLTVCGGDVRKVKLLFLFQLTFTGSPCIYYGDEIGMTGGNDPECRK  473
                               NLL SHDT R LT CGG   K  L  LFQ T  G P IYYGDEIGM G  DP CR 

1bvza.pdb             471  PMIWEEKEQNRGLFEFYKELIRLRHRLASLTRGNVRSWHADKQ-ANLYAFVRTVQDQHVG  529
1smaa.pdb             474  CMVWDPEKQNKELYEHVKQLIALRKQYRALRRGDVAFLT-ADDEVNHLVYAKTDGNETVM  532
                            M W    QN  L E  K LI LR     L RG V          N      T     V 

1bvza.pdb             530  VVLNNRGEKQTVLLQVPESGGKTWLDCLTGEEVHGK--QGQLKLTLRPYQGMILWNGR-  585
1smaa.pdb             533  IIINRSNEAAEIPMPID-ARGKWLVNLLTGERF-A-AEAETLCVSLPPYGFVLYAVESW  588
                              N   E            GK     LTGE          L   L PY          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################