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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:12:16 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/malic_C.html
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#====================================
# Aligned_structures: 2
#   1: 1llqa.pdb
#   2: 1qr6a.pdb
#
# Length:        310
# Identity:      131/310 ( 42.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    131/310 ( 42.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           26/310 (  8.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1llqa.pdb               1  IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACN   60
1qr6a.pdb               1  IQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV-S-VENGLSEQEAQK   58
                           IQGTA V  AGLL    V  K  S  K LF GAG A  GIA  IV      G S  EA  

1llqa.pdb              61  RIYLMDIDGLVTKNR-KEMNPRHVQFAKD-M-PETTSILEVIRAARPGALIGASTVRGAF  117
1qr6a.pdb              59  KIW-FDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLF  117
                            I   D  GL  K R          F                    P   IG       F

1llqa.pdb             118  NEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFEL-NGHT  176
1qr6a.pdb             118  TPDVIRA-ASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRV  176
                              VIRA A INERP IFALSNPT  AECTAEEAYT T G  L ASGSPF    L  G  

1llqa.pdb             177  YKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEI  236
1qr6a.pdb             177  FTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANI  236
                             PGQGNN YIFPGVAL  IL   RH     FL AAK   S  T   L  GR YP L  I

1llqa.pdb             237  REISIQIAVEMAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEYEELINATYDWPEQDMRH  296
1qr6a.pdb             237  QEVSINIAIKVTEYLYANK-AFRYPEPEDKAKYVKERTWRSEYDSL-LPDVYEW------  288
                            E SI IA     Y Y N  A  YP PED  KYV       EY  L              

1llqa.pdb             297  GFPVPVVRH-  305
1qr6a.pdb             289  ---------P  289
                                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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