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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:09:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/malic.html
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#====================================
# Aligned_structures: 2
#   1: 1llqa.pdb
#   2: 1qr6a.pdb
#
# Length:        605
# Identity:      279/605 ( 46.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    279/605 ( 46.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           74/605 ( 12.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1llqa.pdb               1  SVAHHEDVYSHNLPPMDEKEMALYKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQY   60
1qr6a.pdb               1  -----------------------------------EKGK-PLLNPRTNKG-AFTLQERQ-   22
                                                                    L  PR NKG  F L ERQ 

1llqa.pdb              61  LGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKEL  120
1qr6a.pdb              23  LGLQGLLPPKIETQDIQALRFHRNLKK-TSPLEKYIYI-GIQERNEKLFYRILQDDIESL   80
                           LGL GLLPP   TQ  QA R    L      L  YI   G Q RNEKLFYR   D    L

1llqa.pdb             121  MPIVYTPTVGLACQNFGY--IYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDG  178
1qr6a.pdb              81  -PIVYTPTVGLACSQY--GHIFRRPKGLFISISDRG--HVRSIVDNWPENHVKAVVVTDG  135
                            PIVYTPTVGLAC       I R PKGL I I D        I  NW E  V A VVTDG

1llqa.pdb             179  ERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRH  238
1qr6a.pdb             136  ERILGLGDLGVYG-GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYG-LYQ  193
                           ERILGLGDLG YG GIPVGKL LY A  G  P  CLPV  DVGT N  LL DPFY  L  

1llqa.pdb             239  KRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGT  298
1qr6a.pdb             194  KRDRTQQYDDLIDEF-KAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGT  252
                           KR R   YD L D F KA T  YG  TLIQFEDF N NAFR L KY  KY  FNDDIQGT

1llqa.pdb             299  ASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYL  358
1qr6a.pdb             253  AAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV-S-VENGLSEQEAQKKIW-  309
                           A V  AGLL    V  K  S  K LF GAG A  GIA  IV      G S  EA   I  

1llqa.pdb             359  MDIDGLVTKNR-KEMNPRHVQFAKD-M-PETTSILEVIRAARPGALIGASTVRGAFNEEV  415
1qr6a.pdb             310  FDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDV  369
                            D  GL  K R          F                    P   IG       F   V

1llqa.pdb             416  IRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFEL-NGHTYKPG  474
1qr6a.pdb             370  IRA-ASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPG  428
                           IRA A INERP IFALSNPT  AECTAEEAYT T G  L ASGSPF    L  G    PG

1llqa.pdb             475  QGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREIS  534
1qr6a.pdb             429  QGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVS  488
                           QGNN YIFPGVAL  IL   RH     FL AAK   S  T   L  GR YP L  I E S

1llqa.pdb             535  IQIAVEMAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEYEELINATYDWPEQDMRHGFPV  594
1qr6a.pdb             489  INIAIKVTEYLYANK-AFRYPEPEDKAKYVKERTWRSEYDSLLPDVY-EW-P--------  537
                           I IA     Y Y N  A  YP PED  KYV       EY  L    Y             

1llqa.pdb             595  PVVRH  599
1qr6a.pdb                  -----     
                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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