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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 21:29:58 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/kringle.html
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#====================================
# Aligned_structures: 9
#   1: 1kdu.pdb
#   2: 1pk4.pdb
#   3: 1pkr.pdb
#   4: 1tpka.pdb
#   5: 2hppp.pdb
#   6: 2hpqp.pdb
#   7: 2pf1.pdb
#   8: 3kiv.pdb
#   9: 5hpga.pdb
#
# Length:        112
# Identity:       17/112 ( 15.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     20/112 ( 17.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           43/112 ( 38.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kdu.pdb                1  T----CYEGNGHFYRGKASTDTMGRPCLPWNSATVL------QQ-TYHAH-RSDALQLGL   48
1pk4.pdb                1  ----GCYHGDGQSYRGASSTTTTGKKCQSWSSMT------PHRH-QKTPANYPNAG---L   46
1pkr.pdb                1  ----ECKTGNGKNYRGTMSKTKNGITCQKWSSTS------PHRP-RFSPATHPSEG---L   46
1tpka.pdb               1  -GNSDCYFGNGSAYRGTHSLTESGASCLPWNSMILI------GK-VYTAQ-NPSAQALGL   51
2hppp.pdb               1  -----CVPDRGREYRGRLAVTTSGSRCLAWSSEQAKALSK--DQ-DF----NPAVP---L   45
2hpqp.pdb               1  -----CVPDRGQQYQGRLAVTTHGLPCLAWASAQAKALSK--HQ-DF----NSAVQ---L   45
2pf1.pdb                1  --G-NCAEGVGMNYRGNVSVTRSGIECQLWRSRY------PHKP-EINSTTHPGAD---L   47
3kiv.pdb                1  ----QCYHGNGQSYRGTFSTTVTGRTCQSWSSMT------PHRH-QRTPENYPNDG---L   46
5hpga.pdb               1  ----DCMFGNGKGYRGKRVTTVTGTPCQDWAAQE------PHRHSIFTPETNPRAG---L   47
                                C    G  YrG    t  G  C  W s                           L

1kdu.pdb               49  GKHNYCRNPDNRR-RPWCYVQVG-LKPLVQECMVHDCAD-------------   85
1pk4.pdb               47  T-MNYCRNPDAD-KGPWCFTTDP-SV-RWEYCNLGA---C------------   79
1pkr.pdb               47  E-ENYCRNPDNDPQGPWCYTTDP-EK-RYDYCDILE---C------------   80
1tpka.pdb              52  GKHNYCRNPDGDA-KPWCHVLKN-RRLTWEYCDVPS---CST----------   88
2hppp.pdb              46  A-ENFCRNPDGDEEGAWCYVADQP-G-DFEYCNLNY---C------------   79
2hpqp.pdb              46  V-ENFCRNPDGDEEGVWCYVAGKP-G-DFGYCDLNY---C------------   79
2pf1.pdb               48  R-ENFCRNPDGSITGPWCYTTSP-TL-RREECSVPV---CGQDRVTVEVIPR   93
3kiv.pdb               47  T-MNYCRNPDAD-TGPWCFTTDP-SI-RWEYCNLTR---C------------   79
5hpga.pdb              48  E-KNYCRNPDGDVGGPWCYTTNP-RK-LYDYCDVPQ---CAAP---------   84
                              N CRNPD      WC             C                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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