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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:44:57 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/internalin.html
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#====================================
# Aligned_structures: 2
#   1: 1a9na.pdb
#   2: 1d0ba.pdb
#
# Length:        223
# Identity:       25/223 ( 11.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     25/223 ( 11.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           77/223 ( 34.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a9na.pdb               1  VKL-----------------TAELIEQAA-----QYTNAV----RDRELDLRGYKIPVIE   34
1d0ba.pdb               1  ---ETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ   57
                                                AE I                              I    

1a9na.pdb              35  NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94
1d0ba.pdb              58  GIQYL-PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SL-KDLKKLKSLSL  114
                                           N          L  L  L    N I      L   L  L  L L

1a9na.pdb              95  TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLD--FQKVK-  150
1d0ba.pdb             115  EHNGIS---DINGLVHLPQLESLYLGNNKI------TDITVLSRLTKLDTLSLEDNQISD  165
                             N      D   L  L  L  L    N            V         L         

1a9na.pdb             151  LKERQ------------------EAEKMFK-------------  162
1d0ba.pdb             166  IVPLAGLTKLQNLYLSKNHISDLRALAGL-KNLDVLELFSQEC  207
                                                   A                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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