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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 23:28:20 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/igvar-h.html
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#====================================
# Aligned_structures: 21
# 1: 1bafhv.pdb
# 2: 1bbdhv.pdb
# 3: 1bvkb.pdb
# 4: 1dfbhv.pdb
# 5: 1faihv.pdb
# 6: 1fdlhv.pdb
# 7: 1hilhv.pdb
# 8: 1igfhv.pdb
# 9: 1igmhv.pdb
# 10: 1jhlhv.pdb
# 11: 1mamhv.pdb
# 12: 1mcphv.pdb
# 13: 1ncahv.pdb
# 14: 2fb4hv.pdb
# 15: 2fbjhv.pdb
# 16: 3hflhv.pdb
# 17: 3hfmhv.pdb
# 18: 4fabhv.pdb
# 19: 6fabhv.pdb
# 20: 7fabhv.pdb
# 21: 8fabhv.pdb
#
# Length: 142
# Identity: 10/142 ( 7.0%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 19/142 ( 13.4%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 33/142 ( 23.2%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1bafhv.pdb 1 DVQLQESGPGLVKPSQSQSLTCTVTGYSITSDYAWNWIRQFPGNKLEWMGYMSYS--G-S 57
1bbdhv.pdb 1 EVQLQQSGAELVRPGASVKLSCTTSGFNIK-DIYIHWVKQRPEQGLEWIGRLDPA--NGY 57
1bvkb.pdb 1 QVQLQESGPGLVRPSQTLSLTCTVSGFSLT-GYGVNWVRQPPGRGLEWIGMIWGD--G-N 56
1dfbhv.pdb 1 EVQLVESGGGLVQPGRSLRLSCAASGFTFN-DYAMHWVRQAPGKGLEWVSGISWD--SSS 57
1faihv.pdb 1 QVQLQQSGAELVRAGSSVKMSCKASGYTFT-SYGVNWVKQRPGQGLEWIGYINPG--KGY 57
1fdlhv.pdb 1 QVQLKESGPGLVAPSQSLSITCTVSGFSLT-GYGVNWVRQPPGKGLEWLGMIWGD--G-N 56
1hilhv.pdb 1 EVQLVESGGDLVKPGGSLKLSCAASGFSFS-SYGMSWVRQTPDKRLEWVATISNG--GGY 57
1igfhv.pdb 1 EVQLVESGGDLVKPGGSLKLSCAASGFTFS-RCAMSWVRQTPEKRLEWVAGISSG--GSY 57
1igmhv.pdb 1 EVHLLESGGNLVQPGGSLRLSCAASGFTFN-IFVMSWVRQAPGKGLEWVSGVFGS--GGN 57
1jhlhv.pdb 1 QVQLQQSGAELVRPGASVKLSCKASGYTFI-SYWINWVKQRPGQGLEWIGNIYPS--DSY 57
1mamhv.pdb 1 EVKLVESGGGLVQPGGSLRLSCATSGFTFT-DYYMSWVRQPPGKALEWLGFIRNKADGYT 59
1mcphv.pdb 1 EVKLVESGGGLVQPGGSLRLSCATSGFTFS-DFYMEWVRQPPGKRLEWIAASRNKGNKYT 59
1ncahv.pdb 1 QIQLVQSGPELKKPGETVKISCKASGYTFT-NYGMNWVKQAPGKGLEWMGWINTN--TGE 57
2fb4hv.pdb 1 EVQLVQSGGGVVQPGRSLRLSCSSSGFIFS-SYAMYWVRQAPGKGLEWVAIIWDD--GSD 57
2fbjhv.pdb 1 EVKLLESGGGLVQPGGSLKLSCAASGFDFS-KYWMSWVRQAPGKGLEWIGEIHPD--SGT 57
3hflhv.pdb 1 -VQLQQSGAELMKPGASVKISCKASGYTFS-DYWIEWVKQRPGHGLEWIGEILPG--SGS 56
3hfmhv.pdb 1 DVQLQESGPSLVKPSQTLSLTCSVTGDSIT-SDYWSWIRKFPGNRLEYMGYVSYS--G-S 56
4fabhv.pdb 1 EVKLDETGGGLVQPGRPMKLSCVASGFTFS-DYWMNWVRQSPEKGLEWVAQIRNKPYNYE 59
6fabhv.pdb 1 EVQLQQSGVELVRAGSSVKMSCKASGYTFT-SNGINWVKQRPGQGLEWIGYNNPG--NGY 57
7fabhv.pdb 1 AVQLEQSGPGLVRPSQTLSLTCTVSGTSFD-DYYWTWVRQPPGRGLEWIGYVFYT--G-T 56
8fabhv.pdb 1 AVKLVQAGGGVVQPGRSLRLSCIASGFTFS-NYGMHWVRQAPGKGLEWVAVIWYN--GSR 57
v L G C G W q P LEw
1bafhv.pdb 58 TRYNPSLRSRISITRDTSKNQFFLQLKSVTTEDTATYFCARG--------------W-PL 102
1bbdhv.pdb 58 TKYDPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYCDGYYSY-Y-----------DM 105
1bvkb.pdb 57 TDYNSALKSRVTMLKDTSKNQFSLRLSSVTAADTAVYYCARERD------------Y-RL 103
1dfbhv.pdb 58 IGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYCVKGRDY-YD-SGGYF-TV-AF 113
1faihv.pdb 58 LSYNEKFKGKTTLTVDRSSSTAYMQLRSLTSEDAAVYFCARSFYG-GS-DL---AVY-YF 111
1fdlhv.pdb 57 TDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERD------------Y-RL 103
1hilhv.pdb 58 TYYPDSVKGRFTISRDNAKNTLYLQMSSLKSEDSAMYYCARRERY----------DE-NG 106
1igfhv.pdb 58 TFYPDTVKGRFIISRNNARNTLSLQMSSLRSEDTAIYYCTRYSSD----------PF-YF 106
1igmhv.pdb 58 TDYADAVKGRFTITRDNSKNTLYLQMNSLRAEDTAIYYCAKHRVS-Y-------VLT-GF 108
1jhlhv.pdb 58 TNYNQKFKDKATLTVDKSSSTAYMQLSSPTSEDSAVYYCTRDDNY-G-----------AM 105
1mamhv.pdb 60 TEYSASVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCTRDP--Y---------GP-A- 106
1mcphv.pdb 60 TEYSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYCARNYYGS---------TW-YF 109
1ncahv.pdb 58 PTYGEEFKGRFAFSLETSASTANLQINNLKNEDKATFFCARGEDN-F-------G-S-LS 107
2fb4hv.pdb 58 QHYADSVKGRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARDGGH-GFCSS-A-SCF-GP 113
2fbjhv.pdb 58 INYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHY------------YGYN 105
3hflhv.pdb 57 TNYHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYCLHGNY--------------DF 102
3hfmhv.pdb 57 TYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANW----------------DG 100
4fabhv.pdb 60 TYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDMGIYYCTGSYY------------G-M- 105
6fabhv.pdb 58 IAYNEKFKGKTTLTVDKSSSTAYMQLRSLTSEDSAVYFCARSEYYGG--------SY-KF 108
7fabhv.pdb 57 TLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADTAVYYCARNLIA-----------G-GI 104
8fabhv.pdb 58 TYYGDSVKGRFTISRDNSKRTLYMQMNSLRTEDTAVYYCARDPDI-------L-TAF-SF 108
y D y C
1bafhv.pdb 103 AYWGQGTQVSVSEA--KTT--P 120
1bbdhv.pdb 106 DYWGPGTSVTVSSA--KTT--A 123
1bvkb.pdb 104 DYWGQGSLVTVSS--------- 116
1dfbhv.pdb 114 DIWGQGTMVTVSSA--STK--G 131
1faihv.pdb 112 DSWGQGTTLTVSSA--KTT--P 129
1fdlhv.pdb 104 DYWGQGTTLTVSSA--STT--P 121
1hilhv.pdb 107 FAYWGQGTLVTVSAA-KTT--A 125
1igfhv.pdb 107 DYWGQGTTLTVSSAK-TTP--- 124
1igmhv.pdb 109 DSWGQGTLVTVSSGSASAP-TL 129
1jhlhv.pdb 106 DYWGQGTTVTV----------- 116
1mamhv.pdb 107 AYWGQGTLVTVSAA--KTT--P 124
1mcphv.pdb 110 DVWGAGTTVTVSSE--SAR--N 127
1ncahv.pdb 108 DYWGQGTTLTVSSA--KTT--A 125
2fb4hv.pdb 114 DYWGQGTPVTVSS--------- 126
2fbjhv.pdb 106 AYWGQGTLVTVSAE--SAR--N 123
3hflhv.pdb 103 DGWGQGTTLTVSS--------- 115
3hfmhv.pdb 101 DYWGQGTLVTVSAA--KTT--P 118
4fabhv.pdb 106 DYWGQGTSVTVSSA--KTT--A 123
6fabhv.pdb 109 DYWGQGTTLTVSSA--KTT--P 126
7fabhv.pdb 105 DVWGQGSLVTVSSA--STK--G 122
8fabhv.pdb 109 DYWGQGVLVTVSSAST--KG-- 126
wg g v
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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