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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 10:45:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/igC1.html
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#====================================
# Aligned_structures: 5
#   1: 1b0gb.pdb
#   2: 1hsaa.pdb
#   3: 2vaba.pdb
#   4: 2vabb.pdb
#   5: 3hlaa.pdb
#
# Length:        105
# Identity:       15/105 ( 14.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     20/105 ( 19.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/105 ( 18.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b0gb.pdb               1  -MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFS   58
1hsaa.pdb               1  LQRADPPKTHVTHHP--ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPA   58
2vaba.pdb               1  LLRTDSPKAHVTHHS--RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPA   58
2vabb.pdb               1  --IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPK-VEMSDMSFS   57
3hlaa.pdb               1  LQRTDAPKTHMTHHA--VSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPA   58
                                 Pk  v             L C    F P  I       Ge      E       

1b0gb.pdb              59  KDWSFYLLYYTEFTPT---EKDEYACRVNHVTLSQPKIVKWDRDM  100
1hsaa.pdb              59  GDRTFQKWAAVVVPSGEEQ---RYTCHVQHEGLPKPLTLRWEP--   98
2vaba.pdb              59  GDGTFQKWASVVVPLGKEQ---YYTCHVYHQGLPEPLTLRW----   96
2vabb.pdb              58  KDWSFYILAHTEFTPT---ETDTYACRVKHDSMAEPKTVYWDRDM   99
3hlaa.pdb              59  GDGTFQKWAAVVVPSGQEQ---RYTCHVQHEGLPKPL--------   92
                            D  F   a              Y C V H  l  P         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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