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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 10:35:15 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/hr.html
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#====================================
# Aligned_structures: 5
#   1: 1hcp.pdb
#   2: 1hra.pdb
#   3: 1lata.pdb
#   4: 2nlla.pdb
#   5: 2nllb.pdb
#
# Length:         88
# Identity:       27/ 88 ( 30.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     33/ 88 ( 37.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           23/ 88 ( 26.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hcp.pdb                1  -MKET----RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGH--NDYMCPATNQCTIDK   53
1hra.pdb                1  ---MPRVYK-PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKN--MIYTCHRDKNCVINK   54
1lata.pdb               1  ---------RPCLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQ--HNYLCKYEGKCIIDK   49
2nlla.pdb               1  -----------CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKD--LTYTCRDNKDCLIDK   47
2nllb.pdb               1  D--------ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDK   52
                                      C vC D  sG HYgv  CEGCK FF R         Y C     C IdK

1hcp.pdb               54  N-RRKSCQACRLRKCYEVGMMKG-----   75
1hra.pdb               55  -VTRNRCQYCRLQKCFEVGMSK-ESVRN   80
1lata.pdb              50  -IRRKNCPACRYRKCLQAGMNLE-----   71
2nlla.pdb              48  -RQRNRCQYCRYQKCLAMGM--------   66
2nllb.pdb              53  -VTRNQCQECRFKKCIYVGMATDLVLD-   78
                              R  Cq CR  KC   GM        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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