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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:37:44 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/hormone.html
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#====================================
# Aligned_structures: 2
#   1: 1axia.pdb
#   2: 1huw.pdb
#
# Length:        182
# Identity:      141/182 ( 77.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    141/182 ( 77.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           23/182 ( 12.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1axia.pdb               1  T---IPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPS---LCFSESI   54
1huw.pdb                1  -FPTIPLSRLADNAWLRADRLNQLAFDTYQEFEEAYIPKEQIHSFWWNP-QTSLCPSESI   58
                               IPLSRL DNA LRA RL QLAFDTYQEFEEAYIPKEQ  SF  NP    LC SESI

1axia.pdb              55  PTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLE  114
1huw.pdb               59  PTPSNKEETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLE  118
                           PTPSN EETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLE

1axia.pdb             115  ERIQTLMGRLTGQIFKQTYSKFDTALLKNYGLLYCFRRDMTYVATYLRIVQCRSVEGSCG  174
1huw.pdb              119  EGIQTLMGRLE-------------ALLKNYGLLYCFNKDMSKVSTYLRTVQCRSVEGSCG  165
                           E IQTLMGRL              ALLKNYGLLYCF  DM  V TYLR VQCRSVEGSCG

1axia.pdb             175  F-  175
1huw.pdb              166  -F  166
                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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