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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:31:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/hexapep.html
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#====================================
# Aligned_structures: 3
#   1: 1lxa.pdb
#   2: 1qrea.pdb
#   3: 3tdt.pdb
#
# Length:        222
# Identity:        6/222 (  2.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     44/222 ( 19.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          123/222 ( 55.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1lxa.pdb                1  MIDKSAFVHPTAIVEEGASIGANAHI---GP-FCIVGPHVEIGEGTVLKSHVVVNGHTKI   56
1qrea.pdb               1  ---------------SNIRENPV---TPWNPEPS----APVIDPTAYIDPQASVIGEVTI   38
3tdt.pdb                1  ----GFRVVPPATVRQGAFIARNTVL---M--PSYVNIGAYVDEGTMVDTWATVGSCAQI   51
                                           ga i  n         ps       idegt  d  a V g   I

1lxa.pdb               57  GRDNEIYQFASIGEVNQD------LKYAGEP----TRVEIGDRNRIRESVTIHRGT-VQG  105
1qrea.pdb              39  GANVMVSPMASIR------------------SDEGMPIFVGDRSNVQDGVVLHALETI--   78
3tdt.pdb               52  GKNVHLSGGVGIG--GVLEPLQAN------------------PTIIEDNCFIGAR-----   86
                           G nv  s  asIg                             r  i d v iha      

1lxa.pdb              106  GG-------------------LTKVGSDNLLMINAHIAHDCTVGNRCILAN--------N  138
1qrea.pdb              79  --NEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGM--------Q  128
3tdt.pdb               87  ----------------------SEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHY-  123
                                                   vg  v l   s i     vG  t i           

1lxa.pdb              139  ATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQD  180
1qrea.pdb             129  AFVFKS-KVGNNCVLEPRSAA-IGVTIPDGRYIPAGMVVTS-  167
3tdt.pdb              124  GRVPAGSVVVSG------------------------------  135
                           a v     V                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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