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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:14:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/gln-synt_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1f52a.pdb
#   2: 1htqa.pdb
#
# Length:        482
# Identity:      224/482 ( 46.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    224/482 ( 46.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/482 (  3.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f52a.pdb               1  ---SAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGW   57
1htqa.pdb               1  TEKTPDDVFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGF   60
                                  V        V  VD RF D  G  QH TIPA       F  G  FDGSSI G 

1f52a.pdb              58  KGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRA  117
1htqa.pdb              61  QSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIARKAENYLIS  120
                             I ESDM L PD  TA IDPF A  TL I      P TL  Y RDPR IA  AE YL  

1f52a.pdb             118  TGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKY---EGGNKGHRP-  173
1htqa.pdb             121  TGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVR  180
                           TGIADT  FG E EF  FD   F     GS    D I G WN           N G    

1f52a.pdb             174  GVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVE---AHHHEVATAGQNEVATRFNTMTK  230
1htqa.pdb             181  HKGG-YFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGS---GGQAEINYQFNSLLH  236
                              G YFPV P D   D R  M       G   E            GQ E    FN    

1f52a.pdb             231  KADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAG-  289
1htqa.pdb             237  AADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPLMYDETGYAG  296
                            AD  Q YKY   N A   GKT TFMPKP FGDNGSGMHCH SL K G  L         

1f52a.pdb             290  LSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVA  349
1htqa.pdb             297  LSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQRNRSACVRIPITG  356
                           LS  A  YIGG   HA    A  NPT NSYKRLVPGYEAP  L YS RNRSA  RIP   

1f52a.pdb             350  -SPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPP-EEAKEI  407
1htqa.pdb             357  SNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLY-ELPPEEAASI  415
                             PKA R E R PD   NPYL F A LMAGLDGIKNKI P  P DK LY   P EEA  I

1f52a.pdb             408  PQVAGSLEEALNALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHP-VEFELYY  466
1htqa.pdb             416  PQTPTQLSDVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYY  475
                           PQ    L      L  D E L  GGVFT   I   I   RE             EF LYY

1f52a.pdb             467  SV  468
1htqa.pdb             476  DV  477
                            V


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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