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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:13:20 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf9.html
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#====================================
# Aligned_structures: 2
#   1: 1clc.pdb
#   2: 1tf4b.pdb
#
# Length:        518
# Identity:       93/518 ( 18.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     93/518 ( 18.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          135/518 ( 26.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1clc.pdb                1  AM--N-VYEDAFKTAMLGMYLLRCGTSVSATYNGI----HYSHGPCHTNDAYLDYINGQH   53
1tf4b.pdb               1  --EPAFNYAEALQKSMFFYEAQRSGKLP-E-----NNRVS-WRGDSGLNDGA--------   43
                                  Y  A    M      R G                  G    ND          

1clc.pdb               54  T--KKDSTKGWHDAGDYNKYVVNAGITVGSMFLAWEHFKDQLEPVALEIPEKNNSI--PD  109
1tf4b.pdb              44  -DVGLDLTGGWYDAGDHVKFGFPMAFTATMLAWGAIESPEGYIRSG----------QMPY   92
                                D T GW DAGD  K       T                               P 

1clc.pdb              110  FLDELKYEIDWILTMQYPDG-SGRVAHKVSTRNFG----GFIMPENEHDERFFVPW----  160
1tf4b.pdb              93  LKDNLRWVNDYFIKAHP---SPNVLYVQVGDGD--ADHKWWGPAEVMPMERPSFKVDPSC  147
                             D L    D                  V               E    ER         

1clc.pdb              161  -SSAATADFVAMTAMAARIFRPYDPQYAEKCINAAKVSYEFLKNNPANVFANQ--SGFST  217
1tf4b.pdb             148  PGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQLYTFADTYRGVYS---DCVPAGA  204
                             S   A   A  A     F   DP YA      AK  Y F                   

1clc.pdb              218  GEYA-TVSDADDRLWAAAEMWETLGDEEYLRDFENRAAQFS------KKIEA-DFDWDNV  269
1tf4b.pdb             205  F-YNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYDFLSTEQQTDLRSYRWTIAWDDK  263
                             Y       D   W A       GD  YL   E      S               WD  

1clc.pdb              270  ANLGMFTYLLSERPGKNPAL--VQSIKDSLLSTADSIVRTSQN---------HGYGRTLG  318
1tf4b.pdb             264  SYGTYVLLAKE---------TGKQKYIDDANRWLDYWTV----GVNGQRVPYSPGGM-A-  308
                                                  Q   D      D                    G    

1clc.pdb              319  T-TYYWGCNGTVVRQTMILQVANKISP----NNDYVNAALDAISHVFGRNYYNRSYVTGL  373
1tf4b.pdb             309  -VLDTWGALRYAANTAFVALVYAKVIDDPVRKQRYHDFAVRQINYALGDNPRNSSYVVGF  367
                                WG             V  K          Y   A   I    G N  N SYV G 

1clc.pdb              374  GINPPMNPHDRRSGADGI------------WEPWPGYLVGGGWP-GPKDWVDIQDSYQTN  420
1tf4b.pdb             368  GNNPPRNPHHRTAHG---SWTDSIASPAENRHVLYGALVGGPGSPN-DAYTDDRQDYVAN  423
                           G NPP NPH R                        G LVGG          D    Y  N

1clc.pdb              421  EIAINWNAALIYALAGFVNYN-----------------  441
1tf4b.pdb             424  EVATDYNAGFSSALAMLVEE-YGGTPLADFPPTEEPDG  460
                           E A   NA    ALA  V                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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