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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:09:47 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf2.html
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#====================================
# Aligned_structures: 2
# 1: 1bgla.pdb
# 2: 1bhga.pdb
#
# Length: 347
# Identity: 68/347 ( 19.6%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 68/347 ( 19.6%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 98/347 ( 28.2%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1bgla.pdb 1 EVRIENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYP 60
1bhga.pdb 1 -VAVTKSQFLINGKPFYFHGVNKHEDADIRGKGFDWPLLVKDFNLLRWLGANAFRTSHYP 59
V L NGKP GVN HE G D V D L NA R SHYP
1bgla.pdb 61 NHPLWYTLC-DRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPS 119
1bhga.pdb 60 YAEEV-MQMCDRYGIVVIDECPGVGLA---LPQ-FFNNVSLHHHMQVMEEVVRRDKNHPA 114
DRYG V DE L V RD NHP
1bgla.pdb 120 VIIWSLGNES-GH-----GANHDALYRWIKSVDPSRPVQYEGGGAD--------TTATDI 165
1bhga.pdb 115 VVMWSVANEPAS-HLESAGYYLKMVIAHTKSLDPSRPVTFVSN---SNYAADKGAPYVDV 170
V WS NE G KS DPSRPV D
1bgla.pdb 166 ICPMYARVDEDQPFPAVPKW-----------SIKKWLSLP---GETRPLILCEYAH-AMG 210
1bhga.pdb 171 ICLNS-YYSWY---------HDYGHLELIQLQLATQFEN-WYKKYQKPIIQSEYGAETIA 219
IC P I EY
1bgla.pdb 211 NSLG---------------GFAKYWQAFRQ--YPRLQGGFVWDWVDQ-SLIKYDENGNPW 252
1bhga.pdb 220 GF--HQDPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQ--------- 268
Y Q G W D
1bgla.pdb 253 SAY-GGDF-GDTPNDRQFCMNGLVFADRTPHPALTEAKHQQQ----- 292
1bhga.pdb 269 ---SPTRVLG--------NKKGIFTRQRQPKSAAFLLRERYWKIANE 304
G G R P A
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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