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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:06:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf15.html
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#====================================
# Aligned_structures: 2
#   1: 1ayx.pdb
#   2: 1gai.pdb
#
# Length:        542
# Identity:      155/542 ( 28.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    155/542 ( 28.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          120/542 ( 22.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ayx.pdb                1  AYPSFEAYSNYKVDRT-DLETFLDKQKEVSLYYLLQNIAYPEGQFN-NGVPGTVIASPST   58
1gai.pdb                1  ----------------ATLDSWLSNEATVARTAILNNIGA-DGAWVSGADSGIVVASPST   43
                                             L   L     V     L NI    G        G V ASPST

1ayx.pdb               59  SNPDYYYQWTRDSAITFLTVLSELEDNNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDE  118
1gai.pdb               44  DNPDYFYTWTRDSGLVIKTLVDLFRNG--DTDLLSTIEHYISSQAIIQGVSNPSGDL---   98
                            NPDY Y WTRDS     T           T L    E YI      Q  SNPSG     

1ayx.pdb              119  NH-KGLGEPKFNTDGSAYTGAWGRPQNDGPALRAYAISRYLNDVNSLNEGKLVLTDSGDI  177
1gai.pdb               99  -SSGGLGEPKFNVDETAYTGSWGRPQRDGPALRATAMIGFGQWLLDNG-Y----------  146
                               GLGEPKFN D  AYTG WGRPQ DGPALRA A                        

1ayx.pdb              178  NFSSTEDI---YKNIIKPDLEYVIGYWDSTGFDLWEENQGRHFFTSLVQQKALAYAVDIA  234
1gai.pdb              147  ----TSAATEIVWPLVRNDLSYVAQYWNQTGYDLWEEVNGSSFFTIAVQHRALVEGSAFA  202
                               T             DL YV  YW  TG DLWEE  G  FFT  VQ  AL      A

1ayx.pdb              235  KSFDDGDFANT-LSSTASTLESYLSGSDGGFVNTDVNHIVENPDLLQQNSRQGLDSATYI  293
1gai.pdb              203  TAVGSS-C--SWCDSQAPQILCYLQS-----FWT-GSYILANFDS----SRSGKDTNTLL  249
                                         S A     YL         T    I  N D     SR G D  T  

1ayx.pdb              294  GPLLTHDIG-ESSST--PFDVDNEYVLQSYYLLLEDNKDRYSVNSAYSA--GAAIGRYPE  348
1gai.pdb              250  GSIHTFD-PEAG-CDDSTFQPCSPRALANHKEVVDSFRSIYTLNDGLSDSEAVAVGRYPE  307
                           G   T D           F       L             Y  N   S     A GRYPE

1ayx.pdb              349  DVYNGDGSSEGNPWFLATAYAAQVPYKLAYDAKSASNDITINKINYDFFNKYIVDLSTIN  408
1gai.pdb              308  DSYY-----NGNPWFLCTLAAAEQLYDALYQWDKQGSL-EITDVSLDFFKALYS------  355
                           D Y       GNPWFL T  AA   Y   Y          I     DFF           

1ayx.pdb              409  SAYQ-SSDSVTIKSGSDEFNTVADNLVTFGDSFLQVILDHINDDGSLNEQLNRYTGYSTG  467
1gai.pdb              356  ----GAA-TGTYSSSSSTYSSIVSAVKTFADGFVSIVETHAASNGSLSEQFDKSDGDELS  410
                                     T  S S           TF D F      H    GSL EQ     G    

1ayx.pdb              468  AYSLTWSSGALLEAIRLRNK--------VKALA---------------------------  492
1gai.pdb              411  ARDLTWSYAALLTANNRRNSVVPPSWGETSASSVPGTCAATSASGTYSSVTVTSWPSIVA  470
                           A  LTWS  ALL A   RN           A                             

1ayx.pdb                   --     
1gai.pdb              471  TG  472
                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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