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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:45:54 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf10.html
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#====================================
# Aligned_structures: 5
#   1: 1bg4.pdb
#   2: 1clxa.pdb
#   3: 1exp.pdb
#   4: 1taxa.pdb
#   5: 1xyza.pdb
#
# Length:        371
# Identity:       59/371 ( 15.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    105/371 ( 28.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           91/371 ( 24.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bg4.pdb                1  --ASVSIDAKFKAHGKKYLGTIGDQ-----YTL-TKNTKNPAIIKADFGQLTPENSMKWD   52
1clxa.pdb               1  -----GLAS---LA-DFPIGVAVAASGGNA-DI-FTSSARQNIVRAEFNQITAENIMKMS   49
1exp.pdb                1  A---TTLKEAADGAGR-DFGFALDP-----NR--LSEAQYKAIADSEFNLVVAENAMKWD   49
1taxa.pdb               1  -ASAQSVDQLIKARGKVYFGVATDQ-----NRL-T-TGKNAAIIQANFGQVTPENSMKWD   52
1xyza.pdb               1  ----NALRDYAEARGI-KIGTCVNY-----PFYNNSDPTYNSILQREFSMVVCENEMKFD   50
                                              G                      I    F     EN MK d

1bg4.pdb               53  ATEPNRGQFTFSGSDYLVNFAQSNGKLIRGHTLVWHS--QLPGWVS-SITDK-NTLISVL  108
1clxa.pdb              50  YMYSG-SNFSFTNSDRLVSWAAQNGQTVHGHALVWHPSYQLPNWASDSNA----NFRQDF  104
1exp.pdb               50  ATEPSQNSFSFGAGDRVASYAADTGKELYGHTLVWHS--QLPDWAK-NLN-G-SAFESAM  104
1taxa.pdb              53  ATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWHS--QLPSWVT-SITDK-NTLTNVM  108
1xyza.pdb              51  ALQPRQNVFDFSKGDQLLAFAERNGMQMRGHTLIWHN--QNPSWLT-NGNWNRDSLLAVM  107
                           a  p    F F   D l   A  nG    GHtLvWH   QlP W                

1bg4.pdb              109  KNHITTVMTRYKGKIYAWDVLNEIFNE-----------DG-SLRNSVFYNVI-GEDYVRI  155
1clxa.pdb             105  ARHIDTVAAHFAGQVKSWDVVNEALFDSADDPDGRGSAN--GYRQSVFYRQFGGPEYIDE  162
1exp.pdb              105  VNHVTKVADHFEGKVASWDVVNEAFAD-----------GGGRRQDSAFQQKL-GNGYIET  152
1taxa.pdb             109  KNHITTLMTRYKGKIRAWDVVNEAFNQ-----------NG-SLRSTVFLNVI-GEDYIPI  155
1xyza.pdb             108  KNHITTVMTHYKGKIVEWDVANECMDD-----------SGNGLRSSIWRNVI-GQDYLDY  155
                            nHittv     Gk   WDV NE                    r s f     G  Y   

1bg4.pdb              156  AFETARSVDPNAKLYINDYNLDSAGYSKVNGMVSHVKKWLAAGIPIDGIGSQTHLGAGAG  215
1clxa.pdb             163  AFRRARAADPTAELYYNDFNTEEN-GAKTTALVNLVQRLLNNGVPIDGVGFQMHVMNDYP  221
1exp.pdb              153  AFRAARAADPTAKLCINDYNVEGI-NAKSNSLYDLVKDFKARGVPLDCVGFQSHLIVGQV  211
1taxa.pdb             156  AFQTARAADPNAKLYINDYNLDSATYPKTQAIVNRVKQWRAAGVPIDGIGSQTHLSAGQG  215
1xyza.pdb             156  AFRYAREADPDALLFYNDYNIEDL-GPKSNAVFNMIKSMKERGVPIDGVGFQCHFINGM-  213
                           AF  AR aDP A L  NDyN       K       vk     GvPiDg G Q H   g  

1bg4.pdb              216  ---S--AVAGALNALASAG--TKEIAITELDIAG-A------------------------  243
1clxa.pdb             222  ---SIANIRQAMQKIVALSPTL-KIKITELDVRLNNPYDGNSSNDYTNRNDCAV--S-CA  274
1exp.pdb              212  ----PGDFRQNLQRFADLG--V-DVRITELDIRMR-----------------TP--SDAT  245
1taxa.pdb             216  ---A--GVLNALPLLASAG--TPEVAITELDVAG-A------------------------  243
1xyza.pdb             214  SPEYLASIDQNIKRYAEIG--V-IVSFTEIDIRIP-----------------QSENP-AT  252
                                          a  g       iTElD                             

1bg4.pdb              244  ----SSTDYVNVVNACLN---QAKCVGITVWGVADPDSWRS-----SSSPLLFDGNYNPK  291
1clxa.pdb             275  GLDRQKARYKEIVQAYLEVVPPGRRGGITVWGIADPDSWLYTHQNLPDWPLLFNDNLQPK  334
1exp.pdb              246  KLATQAADYKKVVQACMQ---VTRCQGVTVWGITDKYSWVPDVFPGEGAALVWDASYAKK  302
1taxa.pdb             244  ----SPTDYVNVVNACLN---VSSCVGITVWGVADPDSWRA-----STTPLLFDGNFNPK  291
1xyza.pdb             253  AFQVQANNYKELMKICLA---NPNCNTFVMWGFTDKYTWIPGTFPGYGNPLIYDSNYNPK  309
                                   Y   v acl       c g tvWG  D  sW          pL  d n  pK

1bg4.pdb              292  AAYNAIANAL-  301
1clxa.pdb             335  PAYQGVVEALS  345
1exp.pdb              303  PAYAAVMEAF-  312
1taxa.pdb             292  PAYNAIVQNLQ  302
1xyza.pdb             310  PAYNAIKEALM  320
                           pAY a   al 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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