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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:58:34 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/flavbb.html
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#====================================
# Aligned_structures: 2
#   1: 1fcba.pdb
#   2: 1gox.pdb
#
# Length:        379
# Identity:      138/379 ( 36.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    138/379 ( 36.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           45/379 ( 11.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fcba.pdb               1  EDIARKEQLKSLLPPLD-NIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYH   59
1gox.pdb                1  -----------------MEITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFS   43
                                              I N    E  A Q L K    YY SGA D  T  EN NA  

1fcba.pdb              60  RIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTK  119
1gox.pdb               44  RILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHP-EGEYATARAASA--AG  100
                           RI F P IL DV   D  T  LG     P     TA  K   P EGE   AR        

1fcba.pdb             120  VPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVD  179
1gox.pdb              101  TIMTLSSWATSSVEEVASTG---PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD  157
                                S  A  S EE          I   QLYV  DR     LV   E  G KA   TVD

1fcba.pdb             180  APSLGQREKDMKLK------------FSN--GASRALS-KFIDPSLTWKDIEELKKKTKL  224
1gox.pdb              158  TPRLGRREADIKNRFVLPPFLTLKNFEGIDLGLSSY-VAGQIDRSLSWKDVAWLQTITSL  216
                            P LG RE D K                   G S       ID SL WKD   L   T L

1fcba.pdb             225  PIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKL  284
1gox.pdb              217  PILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKA-----AQGRI  271
                           PI  KGV   ED   A   G  G   SNHG RQLD   A I  L E              

1fcba.pdb             285  EVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRL  344
1gox.pdb              272  PVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMAL  331
                            VF DGGVRRGTDV KAL LGA GV  GRP        G  GV K     RDE E  M L

1fcba.pdb             345  LGVTSIAELKPDLLDLSTL  363
1gox.pdb              332  SGCRSLKEISRSHIAADWD  350
                            G  S  E           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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