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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:05:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/fibrinogen_C.html
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#====================================
# Aligned_structures: 3
#   1: 1fzcb.pdb
#   2: 1fzda.pdb
#   3: 3fib.pdb
#
# Length:        268
# Identity:       67/268 ( 25.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    130/268 ( 48.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           75/268 ( 28.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fzcb.pdb               1  SCNIPVVSGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTE-NGGWTVIQNRQDG   59
1fzda.pdb               1  ------------------------------------------------GGWLLIQQRMDG   12
3fib.pdb                1  --QIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEID-GSGNGWTVFQKRLDG   57
                                                                           gGWtviQ R DG

1fzcb.pdb              60  SVDFGRKWDPYKQGFGNVATNTDGKNYCG-LPGEYWLGNDKISQLTRM--GPTELLIEME  116
1fzda.pdb              13  SLNFNRTWQDYKRGFGSLN---------DEGEGEFWLGNDYLHLLTQR--GSVLR-VELE   60
3fib.pdb               58  SVDFKKNWIQYKEGFGHLS---------PTGTTEFWLGNEKIHLISTQSAIPYALRVELE  108
                           SvdF r W  YK GFG l            g gEfWLGNdkihllt    gp  l vElE

1fzcb.pdb             117  DWKGDKVKAHYGGFTVQNEANKYQISVNKYRGT-AGNALMDG-ASQLMGENRTMTIHNGM  174
1fzda.pdb              61  DWAGNEAYAE-YHFRVGSEAEGYALQVSSYEGT-AGDALIEG-SVEE---GAEYTSHNNM  114
3fib.pdb              109  DWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDD-PSDKFFTSHNGM  167
                           DW G    A    F Vg EA kY l v  y Gt AGdAl  g            TsHNgM

1fzcb.pdb             175  FFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAK-HGTD  233
1fzda.pdb             115  QFSTFDRDADQWE-----ENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIE  169
3fib.pdb              168  QFSTWDNDNDKFE-----GNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTP-NGYD  221
                           qFST DrDnD we      nCae dGgGWWyN ChAanlNG YY GG Y        g d

1fzcb.pdb             234  DGVVWMNWKGSWYSMRKMSMKIRPFF--  259
1fzda.pdb             170  NGVVWVSFRGADYSLRAVRMKIRPLVTQ  197
3fib.pdb              222  NGIIWATWKTRWYSMKKTTMKIIPFNR-  248
                           nGvvW  wkg wYSmrk  MKIrPf   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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